#NEXUS

Begin data; 
   
   Dimensions
      ntax = 18
	  nchar = [2008] 2056; 
   
   Format
      datatype = rna
	  missing = ? 
	  gap = - 
	  interleave symbols="0 1 2 3 4 5 6 7 8 9 acefgijlopqtuxz#$%^&*+` \/!@~";
   
   Matrix


[12S]
[       	 			I(1)     1          2        1'          3             4               5         5.1        5.1'   I(2)     6    I(3)      7     I(4)    8       I(5)        8'          7'        9            10       I(6)      10'             9'      9.1        9.1'   6'       11         11'           5'           ]
[		                                                                                                                                                                                                         ^            ^                                 *                       -                                ]
Cow		    			[CAU-]  AGGUU  UGG  UCC  C  AGCCU  U  CCUGUUAACU  C  UUAAUAAA  CUUA  CACAUGC  AA   GC  AUCU  AC   [ACCCCA]  GUG  [AGAAU]  GCCCU  [CUA-]  GGUU  [AUUAA-----]  AACU  AAG  AGGAGC  U  GGC  AUCA  AGCACACA  [CCC---]  UGUAGCU  CACGAC  GCC  UU   GC  UUA-  AC    CAC  ACC   CC  -ACG  GG   AAACA  GCAGUG  ACAAAAA 
Homo    				[AAU-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCU  C  UUAGUAAG  AUUA  CACAUGC  AA   GC  AUCC  CC   [GUUCCA]  GUG  [AGUUC]  ACCCU  [CUA-]  AAUC  [ACCAC-----]  GAUC  AAA  AGGGAC  A  AGC  AUCA  AGCACGCA  [GCAA--]  UGCAGCU  CAAAAC  GCU  UA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AAACA  GCAGUG  AUUAACC 
Rhinoceros_unicornis	[CAU-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAACU  A  UUAGUAAA  AUUA  CACAUGC  AA   GU  AUCC  GC   [ACUCCA]  GUG  [AGAAU]  GCCCU  [CUA-]  AAUC  [ACCCAUAAC-]  GAUU  AAA  AGGAGC  A  GGU  AUCA  AGUACACU  [AAUAAC]  AGUAGCU  AACAAC  ACC  UU   GC  UCA-  AC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  ACAAAAA 
Gorilla_gorilla			[AAU-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAACU  C  UUAGUAGG  AUUA  CACAUGC  AA   GC  AUCC  CC   [GCCCCA]  GUG  [AAUC-]  ACCCU  [CUA-]  AAUC  [ACCAC-----]  GAUC  AAA  AGGAAC  A  AGC  AUCA  AGUACGCA  [GAAA--]  UGCAGCU  CAAAAC  GCU  UA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   GGACA  GCAGUG  AUUAACC 
Balaenoptera			[UAA-]  AGGUU  UGG  UCC  C  AGCCU  U  UCUAUUAGUU  C  UUAACAGA  CUUA  CACAUGC  AA   GU  AUCC  AC   [AUCCCA]  GUG  [AGAAC]  GCCCU  [CUA-]  AAUC  [AUAAA-----]  GAUU  AAA  AGGAGC  G  GGU  AUCA  AGCACGCU  [AGCACU]  AGCAGCU  CACAAC  GCC  UC   GC  UUA-  GC    CAC  GCC   CC  CACG  GG   ACACA  GCAGUG  AUAAAAA 
Equus_caballus			[CAU-]  AGGCU  UGG  UCC  U  AGCCU  U  UUUAUUAGUU  A  UUAAUAGA  AUUA  CACAUGC  AA   GU  AUCC  GC   [ACCCCA]  GUG  [AGAAU]  GCCCU  [CUA-]  AAUC  [ACGUCUCUAC]  GAUU  AAA  AGGAGC  A  GGU  AUCA  AGCACACU  [AGAA--]  AGUAGCU  CAUAAC  ACC  UU   GC  UCA-  GC    CAC  ACC   CC  CACG  GG   ACACA  GCAGUG  AUAAAAA 
Pan_paniscus			[AAC-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCU  C  UUAGUAAG  AUUA  CACAUGC  AA   GC  AUCC  GU   [CCC---]  GUG  [AGUC-]  ACCCU  [CUA-]  AAUC  [ACCAU-----]  GAUC  AAA  AGGAAC  A  AGU  AUCA  AGCACACA  [GCAA--]  UGCAGCU  CAAGAC  GCU  UA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  AUAAACC 
Equus_asinus			[CAU-]  AGGCU  UGG  UCC  U  GGCCU  U  UUUAUUAGUU  A  UUAAUAAA  AUUA  CACAUGC  AA   GU  AUCC  GC   [ACCCCA]  GUG  [AGAAU]  GCCCU  [CUA-]  AAUC  [GCACUCUAC-]  GAUC  AAA  AGGAGC  A  GGU  AUCA  AGCACACU  [ACAA--]  AGUAGCU  CAUAAC  ACC  UU   GC  UAG-  GC    CAC  ACC   CC  CACG  GG   ACACA  GCAGUG  AUAAAAA 
Pongo_pygmaeus_a		[AAU-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCU  C  UUAGUGAG  GUUA  CACAUGC  AA   GC  AUCC  CC   [GCCCCA]  GUG  [AGUC-]  GCCCU  [CCA-]  AGUC  [ACUCU-----]  GACU  AAG  AGGAGC  A  AGC  AUCA  AGCACGCA  [ACAG--]  CGCAGCU  CAAGAC  GCU  CA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  AUAAGUC 
Didelphis_virginiana	[AU--]  AGGUU  UGG  UCC  U  AGCCU  U  AUUAUUAGUU  C  UAAUUAGA  CCUA  CACAUGC  AA   GU  UUCC  GC   [UACCCA]  GUG  [AGAAU]  GCCCU  [UUA-]  AGUC  [UUAUAAAUU-]  AAGC  AAA  AGGAGC  U  GGU  AUCA  GGCACACA  [AAA---]  UGUAGCC  GAUAAC  ACC  UU   GC  UUU-  AC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  AUUAAAA 
Macropus_robustus		[CAA-]  AGGUU  UGG  UCC  U  GGCCU  U  ACUGUUAAUU  G  UAGUUAGA  CCUA  CACAUGC  AA   GU  UUCC  GC   [UGCCCG]  GUG  [AAAAU]  GCCCU  [CAA-]  AAUU  [AAAACUA---]  AAUC  AAC  AGGAGC  G  GGU  AUCA  GGCACACU  [UAUA--]  AGUAGCC  CAUGAC  GCC  UU   GC  UUU-  GC    CAC  ACC   CC  CACG  GG   AUACA  GCAGUG  ACUAAUA 
Balaenoptera_musculus	[AA--]  AGGUU  UGG  UCC  C  AGCCU  U  UCUAUUAGUU  C  UUAACAAA  CUUA  CACAUGC  AA   GC  GUCU  AC   [AUCCCG]  GUG  [AGAAU]  GCCCU  [CUA-]  AAUC  [ACAAA-----]  GAUC  AAA  AGGAGC  A  GGU  AUCA  AGCACGCU  [AGUACU]  AGCAGCU  CACAAC  GCC  UC   GC  UUA-  GC    CAC  ACC   CC  CACG  GG   ACACA  GCAGUG  AUAAAAA 
Hylobates				[AAU-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCC  C  CUGGCAAG  AUUA  CACAUGC  AA   GC  AUCC  CC   [GCCCCG]  GUG  [AAAUC]  GCCCU  [UCA-]  AAUC  [ACCCGU----]  GAUC  AAA  AGGAGC  A  GGU  AUCA  AGCACGCA  [GUAA--]  UGCAGCU  CAAAAC  ACC  CU   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  AUAAACC 
Pongo_pygmaeus			[AAC-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCC  C  UUAGUGAG  AUUA  CACAUGC  AA   GC  AUCC  CC   [GCCCCA]  GUG  [AGUC-]  GCCCU  [CCA-]  AGCC  [ACUCU-----]  GACU  AAG  AGGAAC  A  AGC  AUCA  AGCACGCA  [ACAA--]  CGCAGCU  CAAGAC  GCU  UA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  ACAAAUC 
Pan_troglodytes			[AAC-]  AGGUU  UGG  UCC  U  AGCCU  U  UCUAUUAGCU  C  UUAGUAAG  AUUA  CACAUGC  AA   GC  AUCC  CC   [GCCCC-]  GUG  [AGUC-]  ACCCU  [CUA-]  AAUC  [GCCAU-----]  GAUC  AAA  AGGAAC  A  AGU  AUCA  AGCACGCA  [GCAA--]  UGCAGCU  CAAAAC  GCU  UA   GC  CUA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  AUAAACC 
Papio					[AAAU]  AGGCU  UGG  UCC  U  GGCCU  U  UCUAUUGACU  C  UUAGCAAG  AUUA  CACAUGC  AA   GC  AUCC  CC   [AUUCCG]  GUG  [AAGAC]  GCCCU  [UCC-]  CAUC  [AACAU-----]  GACC  AGA  AGGAGC  A  AGU  AUCA  AGCACGC-  [CCAU--]  -GCAGCU  CAAAAC  ACU  UU   GC  CCA-  GC    CAC  ACC   CC  CACG  GG   AGACA  GCAGUG  ACAAACC 
Echidna					[ACAA]  AGGUU  UGG  UCC  U  AGCCU  U  AUUGUUAGAU  U  UGACUAAA  UUUA  UACAUGC  AA   GU  AUCC  GC   [AGACCA]  GUG  [AGAAU]  ACCCU  [AAA-]  AACU  [UUAAGCA---]  AGUU  AAA  AGGAGU  U  GAU  AUCA  GGCACAC-  [UAAC--]  -GUAGCC  CACAAC  AUC  UU   GC  CUUA  GC    CAC  ACC   CC  CACG  GG   ACACA  GCAGUA  AUAAAAA 
Platypus				[AUAA]  AGGUU  UGG  UCC  U  AGCCU  U  ACUGUUAGAU  U  UGAUUAGA  UUUA  UACAUGC  AA   GU  AUCC  GC   [AACCCA]  GUG  [AGAAU]  ACCCU  [AAA-]  AACU  [CUUAACA---]  AGUU  AGA  AGGAGU  A  GAU  AUCA  GGCACAC-  [UAAA--]  -GUAGCC  CACAAC  AUC  UU   GC  CCUA  GC    CAC  ACC   CC  CACG  GG   ACACA  GCAGUA  AUAGAAA 



[       	        12                 12'             4'      I(7)       13      A           14         B       A'   B'          14'        13'          3'       I(8)      15    C            ]
[		                                              -                                                                                                                                     t   ]
Cow			  UUAAGCCAUAAAC  GAAA  GUUUGACUAA   G  UUAUAUUAA  [UU---] A  GGGUU   GGU  AAAUC  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AGCUAACAGG  [AGUA-] C  GGC   GU  AAA  A  C 
Taxon_01	  UUUAGCAAUAAAC  GAAA  GUUUAACUAA   G  CUAUACUAA  [CCCC-] A  GGGUU   GGU  CAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  CACGA  UU  AACCC  A  AGUCAAUAGA  [AGC--] C  GGC   GU  AAA  G  A 
Taxon_02	  UUAAGCAAUAAAC  GAAA  GUUUGACUAA   G  UUAUACUAA  [GC---] A  GAGCC   GGU  AAAUU  UCGUG  CCA  GC  C  ACC   GC  GGCCA  UACGA  UU  GACUC  A  AAUUAAUAGA  [ACCU-] C  GGC   GU  AAA  G  C 
Taxon_03	  UUUAGCAAUAAAC  GAAA  GUUUAACUAA   G  CCAUACUAA  [CCCC-] A  GGGUU   GGU  CAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  CACGA  UU  AACCC  A  AGCCAAUAGA  [AAU--] C  GGC   GU  AAA  G  A 
Taxon_04	  UUAAGCUAUAAAC  GAAA  GUUCGACUAA   G  UCAUGUUAA  [UUUA-] A  GGGUU   GGU  AAACU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UC  GACCC  A  AAUUAAUAGA  [AGCA-] C  GGC   GU  AAA  G  A 
Taxon_06	  UUAAGCUAUGAAC  GAAA  GUUCGACUAA   G  UCAUAUUAA  [AUA--] A  GGGUU   GGU  AAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AAUUAAUAAA  [UCUC-] C  GGC   GU  AAA  G  C 
Taxon_07	  UUUAGCAAUAAAC  GAAA  GUUUAACUAA   G  CCAUACUAA  [CCUC-] A  GGGUU   GGU  CAAUU  UCGUG  CUA  GC  C  ACC   GC  GGUCA  CACGA  UU  AACCC  A  AGUCAAUAGA  [AAC--] C  GGC   GU  AAA  G  A 
Taxon_08	  UUAAGCUAUGAAC  GAAA  GUUCGACUAA   G  UUAUAUUAA  [ACU--] A  GGGUU   GGU  AAAAU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AAUUAAUAAA  [CCCUC] C  GGC   GU  AAA  G  C 
Taxon_09	  UUUAGCAAUAAAC  GAAA  GUUCAACUAA   G  CUACACUAA  [CCCC-] A  GGGUU   GGU  CAACU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  CACGA  UU  AGCCC  A  AGUUAAUAGA  [GAU--] C  GGC   GU  AGA  G  A 
Taxon_10	  UUAAGCAAUAAAC  GAAA  GUUUGACUAA   G  UCAUAAUUU  [ACAUU] A  GGGUU   GGU  CAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AAUUAAUAAA  [UAA--] C  GGC   GU  AAA  G  A 
Taxon_11	  UUAAGCUAUAAAC  GAAA  GUUUGACUAA   A  UCAUAACUA  [ACU--] A  GGGUU   GGU  AAAUC  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AAUUAACAGA  [CAAA-] C  GGC   GU  AAA  G  C 
Taxon_13	  UUAAGCUAUAAAC  GAAA  GUUUGACUAA   G  UUAUGUUAA  [UA---] A  GGGUU   GGU  AAACU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AAUUAAUAGA  [AACA-] C  GGC   GU  AAA  G  A 
Taxon_14	  UUUAGCAAUAAAC  GAAA  GUUUAACUAA   G  CUAUGCCAA  [CCC--] A  GGGUU   GGU  CAACU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  C  AGUUAAUAGA  [GCC--] C  GGC   GU  AAA  G  A 
Taxon_15	  UUUAGCAAUGAAC  GAAA  GUUCAACUAA   G  CUACACUAG  [CCAC-] A  GGGCU   GGU  CAACU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  CACGA  UU  AGCCC  A  AGUUAAUAGA  [GAU--] C  GGC   GU  AGA  G  A 
Taxon_16	  UUUAGCAAUAAAC  GAAA  GUUUAACUAA   G  CCAUACUAA  [CCUC-] A  GGGUU   GGU  CAAUU  UCGUG  CUA  GC  C  ACC   GC  GGUCA  UACGA  UU  AACCC  A  AGUCAAUAGA  [AAC--] C  GGC   GU  AAA  G  A 
Taxon_18	  UUUAGCAAUGAAC  GAAA  GUUUAACUAA   G  CUAUGCUAU  [GCC--] A  GGGUU   GGU  CAACU  UCGUG  CCA  GC  C  ACC   GC  GGUUA  UACGA  UU  AACCC  C  AGCCAAUAGA  [AAC--] C  GGC   GU  AGA  G  G 
Taxon_19	  UUGGUCAAUAAAC  GUAA  GUUUGAACAA   G  UUAUAGUCA  [ACA--] A  GAGUC   GGU  AAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUUA  UACGA  UU  GACUC  A  ACCUAACAAA  [UAA--] C  GGU   GU  AAA  G  C 
Taxon_20	  UUAGUCAAUAAAC  GCAA  GUUUGAACAA   G  UCAUAAUCA  [AUA--] A  GAGUC   GGU  AAAUU  UCGUG  CCA  GC  C  ACC   GC  GGUCA  UACGA  UU  GACUC  A  ACCUAACAAA  [UAA--] C  GGU   GU  AAA  A  C 


[       	  16         17         I(9)             18    18.1          19        20      I(10)     20'        19'     I(11)  18.1'          21         21'      18'     I(12)    17'  I(13)     16' ]
[		                                                               *                                           *                                                                                  ]
Cow			 GUGU  UAAA  GC  [ACCAUACCAA------] A  UAGGGU   UA  AAUU  C-UAACUA    AGCU  GU [AAA] A  AGCC   A  UGAUU-AA  [AAUA]  AA  AAUAAA   UGAC  GAAA  GUG    ACCCUA  [CAAUA--]  GC  [CGAC--]  GCAC  
Taxon_01	 GUGU  UUUA  GA  [UCACCCCCUCCCCA--] A  UAAAGC   UA  AAAC  U-CACCUG    AGUU  GU [AAA] A  AACU   C  CAGUU-GA  [CAC-]  AA  AAUAGA   CUAC  GAAA  GUG    GCUUUA  [ACAUA--]  UC  [UGAAC-]  ACAC  
Taxon_02	 GUGU  CAAA  GA  [UAUAACCCCUA-----] A  UAAAGU   UA  AAAA  CAUAGUUA    AGCU  GU [AAA] A  AGCU   A  UAACC-AA  [GAU-]  AA  AAUAAA   CCAC  GAAA  GUG    ACUUUA  [AUAUA--]  UC  [ACCC--]  ACAC  
Taxon_03	 GUGU  UUUA  GA  [UCAAUCCCCA------] A  UAAAGC   UA  AAAU  U-CACCUG    AGUU  GU [AAA] A  AACU   C  CAGCU-GA  [UAU-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [AUAUA--]  UC  [UGAAC-]  ACAC  
Taxon_04	 GUGU  UAAG  GA  [GCCACAUGAA------] A  UAAAGU   CA  AACC  U-UAAUUA    AGCU  GU [AAA] A  AGCC   C  UAAUU-AA  [AAUU]  AA  GCCAAA   CUAC  GAAA  GUG    ACUUUA  [AUAUAA-]  UC  [UGAUC-]  ACAC  
Taxon_06	 GUGU  CAAA  GA  [CUAAUACCAAA-----] A  UAAAGU   UA  AAAC  C-CAGUUA    AGCC  GU [AAA] A  AGCU   A  CAACC-AA  [AGU-]  AA  AAUAGA   CUAC  GAAA  GUG    ACUUUA  [AUACC--]  UC  [UGACU-]  ACAC  
Taxon_07	 GUGU  UUUA  GA  [UCACCCCCCCCCCA--] A  UAAAGC   UA  AAAU  U-CACCUG    AGUU  GU [AAA] A  AACU   C  CAGCU-GA  [UAC-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [ACACA--]  UC  [UGAAC-]  ACAC  
Taxon_08	 GUGU  CAAA  GA  [CCCAUACUAAA-----] A  UAAAGU   UA  AAAC  C-CAGUUA    AGCU  GU [AAA] A  AGCU   A  CAACU-AA  [AGU-]  AA  AAUAAA   CUAC  GAAA  GUG    ACUUUA  [AUACC--]  UC  [UGACC-]  ACAC  
Taxon_09	 GUGU  UUUA  GA  [UUCUUUUUCUCCCCA-] A  UAAAGC   UA  AAAU  U-UACCUG    AGUU  GU [AGA] A  AACU   U  AAGCU-AA  [UAC-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [AUAUA--]  UC  [UGAAC-]  ACAC  
Taxon_10	 GUGU  UUAA  GU  [UAUAUACAAAA-----] A  UAAAGU   UA  AUAA  U-UAACUA    AACU  GU [AGC] A  CGUU   C  UAGUU-AA  [UAUU]  AA  AAUACA   UAAU  AAAA  AUG    ACUUUA  [AUAUC--]  AC  [CGACU-]  ACAC  
Taxon_11	 GUGU  UUAA  GC  [CAAAACACACACA---] A  UAAAGC   UA  AGAU  C-UAACUA    AACU  GU [AAU] A  CGUU   A  UAGUU-AA  [CAUC]  AA  AAUACA   UGAC  CAAA  GUA    GCUUUA  [ACCAU--]  GC  [UGAAG-]  ACAC  
Taxon_13	 GUGU  UAAG  GA  [GUCUCAUAGA------] A  UAAAGU   CA  AACC  U-UAAUUA    AGCU  GU [AAA] A  AGCC   A  UAAUU-AA  [AAUU]  AA  GCCAAA   CUAC  GAAA  GUG    ACUUUA  [AUAUGA-]  UC  [UGAUC-]  ACAC  
Taxon_14	 GUGU  UUUA  GA  [UUGCUCCCUA------] A  UAAAGC   UA  AGCU  C-CAUCCA    AGUC  GU [AAA] A  AACU   C  UGGCU-GC  [UAU-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [ACACC--]  UC  [UGAAU-]  ACAC  
Taxon_15	 GUGU  UUUA  GA  [UUUUUUUCCCCCCA--] A  UAAAGC   UA  AAAU  U-UACCUG    AGUU  GU [AGA] A  AACU   U  AAGUU-AA  [UAC-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [AUAUA--]  UC  [UGAAC-]  ACAC  
Taxon_16	 GUGU  UUUA  GA  [UCACCCCCCC------] A  UAAAGC   UA  AAAU  U-CACCUG    AGUU  GU [AAA] A  AACU   C  CAGCU-GA  [UAC-]  AA  AAUAAA   CUAC  GAAA  GUG    GCUUUA  [ACACA--]  UC  [UGAAU-]  ACAC  
Taxon_18	 GUGU  UUUA  GA  [UCUAGUCCA-------] A  UAAAGC   UA  AACC  C-CAUCUA    AACU  GU [A--] A  AACC   C  UAGCU-AA  [CGU-]  AA  AAUAAA   CUAC  GAAG  GUG    GCUUUA  [UAAU---]  UC  [CUGAAC]  ACAC  
Taxon_19	 GUGU  UUAA  AA  [CUUUAAUCA-------] A  UAAGAU   UC  AAGC  A-GGACUA    AUCC  GU [GAC] A  AGUC   C  UAGUC-CA  [UGCU]  AA  AAUCAC   CCAC  GAAA  GUG    AUCUUA  [UAAUUC-]  UU  [GAAU--]  ACAC  
Taxon_20	 GUGU  UUAA  AA  [ACUUAAACUA------] A  UAAGAU   UA  AAGU  A-GAACUA    AACU  GU [GAU] A  AGUC   A  UAGUU-AA  [UACU]  AA  AGCCAU   CUAC  GAAA  GUG    AUCUUA  [GACUAA-]  UU  [GAAU--]  ACAC  


[       	           22             23               23'          22'                   24       I(14)    C'        24'         15'     25.1           25         25'         25.1'       2'             26            26.1 I(15)   27          28      ]
[		                                                                                                                      t                                                                               -   t   --                                  ]
Cow			UAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACACA  GAUAAUU  [ACAUAA-]  AC  AA  AAUUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUU  A  UAU  CC  [UU-]  CUAGA   GGAGCCUGUUCU  
Taxon_01	AAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACCUC  AACAGUU  [AAAUCA-]  AC  AA  AACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAU  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_02	UACA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCCAAACUCA  AAUAAUU  [CUUCCCA]  AC  AA  AAUUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCC  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUU  A  UAU  CC  [CC-]  CUAGA   GGAGCCUGUUCC  
Taxon_03	AAUA   GCUAGGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCCUAGC   CCUAAACUUC  AACAGUU  [AAAUUA-]  AC  AA  GACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAU  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_04	GACA   GCUAAGAUCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGU   CGUAAACCCC  AAUAGUC  [ACAAA--]  AC  AA  GACUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCC  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCCUC  A  UAC  CC  [AU-]  CUAGA   GGAGCCUGUUCU  
Taxon_06	GAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUAA  AAUAGCU  [UACCACA]  AC  AA  AGCUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCC  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUU  A  CAU  CC  [CU-]  CUAGA   GGAGCCUGUUCC  
Taxon_07	AAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUUC  AACAGUU  [AAAUUA-]  AC  AA  AACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAU  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_08	GAUA   GCUAAGGCCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACCAA  AAUAGCU  [CACCAUA]  AC  AA  AGCUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCC  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUU  A  CAU  CC  [CU-]  CUAGA   GGAGCCUGUUCC  
Taxon_09	AAUA   GCUAAGGCCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUUU  AACAGUU  [AAAUCA-]  AC  AA  AACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAU  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_10	GAAA   ACUAAGACACA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGU   AAUAAACUAA  AAUAAUU  [UAACAA-]  AC  AA  AAUUAUU   C   GCC  A   GAG  AACUACU  AGC  AAUU  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCCCU  A  AAC  CC  [AC-]  CUAGA   GGAGCCUGUUCU  
Taxon_11	UACA   GCUAAGAGACA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CUUAAACCUA  GAUAAUU  [UAAUA--]  AC  AA  AAUUAUU   C   GCC  A   GAG  AACUACU  AGC  CAAU  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCC-U  A  AAC  CC  [AC-]  CUAGA   GGAGCCUGUUCU  
Taxon_13	GACA   GCUAAGAUCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CAUAAACCCC  AGUAGUC  [ACAAA--]  AC  AA  GACUAUU   C   GCC  A   GAG  UACUACU  AGC  AACA  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUC  A  UAC  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_14	AAUA   GCUGAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUCAGC   CCUAAACUUC  AACAGUC  [AAAUCA-]  AC  AA  GACUGCU   C   GCC  A   GAA  CACUACG  AGC  AACA  GCU  UAAAA  AUC   AAA  GGA  CC  UGGCGGUGCUUC  A  CAC  CC  [CC-]  CUAGA   GGAGCCUGUCCU  
Taxon_15	AAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUUU  AACAGUU  [GAAUCA-]  AC  AA  AACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAC  CC  [CC-]  CUAGA   GGAGCCUGUUCU  
Taxon_16	AAUA   GCUAAGACCCA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUUC  AACAGUU  [AAAUUA-]  AC  AA  AACUGCU   C   GCC  A   GAA  CACUACG  AGC  CACA  GCU  UAAAA  CUC   AAA  GGA  CC  UGGCGGUGCUUC  A  UAU  CC  [CU-]  CUAGA   GGAGCCUGUUCU  
Taxon_18	AAUA   GCCAAGACCCA  AAC  UGGG  AUUAGACAC  CCCA  CUA  UCGUUGGC   CCUAAACCUC  AAUAGUU  [AAAAUA-]  AC  AA  AACUAUU   C   GCC  A   GAA  UACUACA  AGC  AACA  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUC  A  UAC  CC  [C--]  CUAGA   GGAGCCUGUUCU  
Taxon_19	GAUA   GCUAAGACACA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUUA  AGUCGUU  [AAACA--]  AC  AA  AACCACU   C   ACC  A   GAG  AACUACU  AGC  AACA  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUC  A  C-C  CC  [U--]  CUAGA   GGAGCCUGUUCU  
Taxon_20	GAUA   GCUAAGGUACA  AAC  UGGG  AUUAGAUAC  CCCA  CUA  UGCUUAGC   CCUAAACUCA  AGUCGUU  [UAAUA--]  AC  AA  AACUACU   C   ACC  A   GAG  AACUACU  AGC  AACA  GCU  UAAAA  CUC   AAA  GGA  CU  UGGCGGUGCUUC  A  C-C  CC  [U--]  CUAGA   GGAGCCUGUUCU  


[       	       29              29'               30                          31                 32      33    I(16)   33'              32'           34     I(17)      34'                31'                  30    I(18)       28               35    I(19)     35'  ]
[		                                                         ----                                                                                                                                                                                                      ]
Cow			AUA   AUCG  AUAAACCC  CGAU   AAACCUCA  CCAAUUC  UUGCUAAUACA  GUCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [AAAA-]  AGG   AAAAAAA  GUAAGC  GUAAU   UAU  [GAUAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAAC  CUAU  GAAAUGG  [GA]  AGAAAUGGGCUAC  AUU   CUCU  [ACACCA]  AGAG   
Taxon_01	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCACCUC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   CUACAAA  GUAAGC  GCAAG   UAC  [CCAC----]  GUA   AAG  ACGUUAGGUCAAGGUGUAGC  CCAU  GAGGUGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACCCC-]  AGAA   
Taxon_02	AUA   ACCG  AUAAACCC  CGAU   AAACCUUA  CCAGCCC  UUGCUAAUUCA  GCCUAUAUACCGCCAUCUU  CA  GCCAAC    CCU  [AAAA-]  AGG   AACCAAA  GUAAGC  ACAAG   UAU  [AAGAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  UUAU  GGGAUGG  [AG]  AGAAAUGGGCUAC  AUU   UUCU  [ACUUCA]  AGAA   
Taxon_03	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCACCUC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   CCACAAA  GUAAGC  ACAAG   UAC  [CCAC----]  GUA   AAG  ACGUUAGGUCAAGGUGUAGC  CCAU  GAGGUGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACUUC-]  AGAA   
Taxon_04	GUA   ACCG  AUAAACCC  CGAU   CAACCUCA  CCAACCC  UUGCUACUUCA  GUCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [AA---]  AGG   GAGAAAA  GUAAGC  AUAAC   CAU  [CCUAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAAC  CCAU  GGGUUGG  [GA]  AGUAAUGGGCUAC  AUU   UUCU  [AAGCUA]  AGAA   
Taxon_06	AUA   AUCG  AUAAACCC  CGAU   AAACCCCA  CCAUCCC  UUGCUAAUUCA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [AAACA]  AGG   UACCGAA  GUAAGC  ACAAA   UAU  [CCAAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  CCAU  GGGAUGG  [AG]  AGAAAUGGGCUAC  AUU   UUCU  [ACCCUA]  AGAA   
Taxon_07	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCGCCUC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   UUACAAA  GUAAGC  GCAAG   UAC  [CCAC----]  GUA   AAG  ACGUUAGGUCAAGGUGUAGC  CUAU  GAGGCGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACCCC-]  AGAA   
Taxon_08	GUA   AUCG  AUAAACCC  CGAU   AAACCCCA  CCAUCCC  UUGCUAAUUCA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [AAACA]  AGG   UACCAAA  GUAAGC  ACAAU   CAU  [CCAAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  CCAU  GGGAUGG  [AG]  AGAAAUGGGCUAC  AUU   UUCU  [ACUCUA]  AGAA   
Taxon_09	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCACCCC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   CCACGAA  GUAAGC  GCAAG   CAU  [CCAC----]  AUA   AAG  ACGUUAGGUCAAGGUGUAGC  CCAU  GGAGUGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACUUC-]  AGAA   
Taxon_10	AUA   AUCG  AUAAACCC  CGAU   AAACCAGA  CCUUAUC  UUGCCAAUACA  GCCUAUAUACCGCCAUCGU  CA  GCUAAC    CUU  [UAAA-]  AAG   AAUUACA  GUAAGC  AAAAU   CAU  [ACAAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  AUAU  GAUAAGG  [AA]  AGUAAUGGGCUAC  AUU   CUCU  [ACUAU-]  AGAG   
Taxon_11	AUA   AUCG  AUAAACCC  CGAU   AAACCCCA  CCUUUUC  UUGCCAAUCCA  GCCUAUAUACCGCCAUCGU  CA  GCUAAC    CCC  [AACA-]  GGG   AUAAAAA  GUAAGC  AAGAU   CAU  [CAACC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  AUAU  GAAAAGG  [UA]  AGUAAUGGGCUAC  AUU   UUCU  [AAAUU-]  AGAA   
Taxon_13	GUA   ACCG  AUAAACCC  CGAU   UAACCUCA  CCAACCC  UUGCUACUUCA  GUCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [AAAA-]  GGG   AACGAAA  GUAAGC  AUAAU   CAU  [CCUAC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAAC  CAAU  GGGUUGG  [GA]  AGAAAUGGGCUAC  AUU   UUCU  [AAACUA]  AGAA   
Taxon_14	AUA   AUCG  AUAAACCC  CGUU   CAACCUCA  CCAUCUC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GACAA]  AGG   CUAUAAA  GUAAGC  ACAAA   CAC  [CCAC----]  AUA   AAG  ACGUUAGGUCAAGGUGUAGC  CCAU  GAGAUGG  [GA]  AGAGAUGGGCUAC  AUU   UUCU  [AUGCC-]  AGAA   
Taxon_15	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCACCCC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   CCACGAA  GUAAGC  GCAAA   CAC  [CCAC----]  GUA   AAG  ACGUUAGGUCAAGGUGUAGC  CCAU  GGAGUGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACUUC-]  AGAA   
Taxon_16	GUA   AUCG  AUAAACCC  CGAU   CAACCUCA  CCGCCUC  UUGCU----CA  GCCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   UUACAAA  GUAAGC  ACAAG   UAC  [CCAC----]  GUA   AAG  ACGUUAGGUCAAGGUGUAGC  CUAU  GAGGUGG  [CA]  AGAAAUGGGCUAC  AUU   UUCU  [ACCCC-]  AGAA   
Taxon_18	GUA   AUCG  AUAAACCC  CGAU   CCACCCCA  CCCUCUC  UUGCU----UA  GUCUAUAUACCGCCAUCUU  CA  GCAAAC    CCU  [GAUGA]  AGG   CUACGAA  GUGAGC  GCAAA   UGC  [CCUCCCCC]  GCA   AAA  ACGUUAGGUCAAGGUGUAAC  UUAU  GAGACGG  [U-]  AAAAAUGGGCUAC  AUU   UUCU  [ACUUC-]  AGAA   
Taxon_19	AUA   AUCG  AUAAACCC  CGAU   ACACCCCA  CCAUCUU  UUGCCACUACU  GUCUAUAUACCGCCAUCGU  CA  GCCAAC    CCU  [AAAA-]  AGG   AAUAACA  GUAGGC  ACAAU   UAU  [UCUUC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  CUAU  AAGAUGG  [A-]  AGAAAUGGGCUAC  AUU   UUCU  [AACCU-]  AGAA   
Taxon_20	AUA   AUCG  AUAAACCC  CGAU   ACACCUCA  CCAUCUU  UUGCCACUACU  GUCUAUAUACCGCCAUCGU  CA  GCCAAC    CCU  [AAAA-]  AGG   AACAAAA  GUAGGC  GUAAU   CAU  [UUUUC---]  AUA   AAA  ACGUUAGGUCAAGGUGUAGC  CUAU  AAGAUGG  [A-]  AGAAAUGGGCUAC  AUU   UUCU  [ACAUU-]  AGAA   


[       	       I(20)                36              I(21)         36'               27'             37                  37'            26.1'            26'       ]
[		                                -                          **                                                                                t      *         ]
Cow			[AAUCAAGC---------] A   CGAAAGUUAUU  AUGAAA [CC--]  AAU--AACCAAAG   GAGGA  UUUAG  CAGUA   AACUAAG  AAUAGAGUG  CUUAGUU   GAAUUA  GG  CCA  U  GAAG-CACGCACA  
Taxon_01	[AACU-------------] A   CGAUAGCCCUU  AUGAAA [CUU-]  AAG--GGUCGAAG   GUGGA  UUUAG  CAGUA   AACUGAG  AGUAGAGUG  CUUAGUU   GAACAG  GG  CCC  U  GAAG-CGCGUACA  
Taxon_02	[CAACAACUACCCAA---] A   CGAAGGCUUUU  AUGAAA [UU--]  AAA--AGCUAAAG   GAGGA  UUUAG  CAGUA   AAUUAAG  AAUAGAGAG  CUUAAUU   GAACCA  GG  CCA  U  AAAG-CACGCACA  
Taxon_03	[AACU-------------] A   CGAUAACCCUU  AUGAAA [CCU-]  AAG--GGUAGAAG   GUGGA  UUUAG  CAGUA   AACUAAG  AGUAGAGUG  CUUAGUU   GAACAG  GG  CCC  U  GAAG-CGCGUACA  
Taxon_04	[CAUCCCCUAUACUCAC-] A   CGAAAGUUUUU  AUGAAA [CUU-]  AAA--AACUAAAG   GAGGA  UUUAG  UAGUA   AAUCAAG  AGCAGAGUG  CUUGAUU   GAAUAA  GG  CCA  U  GAGGGCACGCACA  
Taxon_06	[CAAGAACUUUAACCCGG] A   CGAAAGUCUCC  AUGAAA [CU--]  GGA--GACUAAAG   GAGGA  UUUAG  CAGUA   AAUUAAG  AAUAGAGAG  CUUAAUU   GAAUCA  GG  CCA  U  GAAG-CGCGCACA  
Taxon_07	[AAUU-------------] A   CGAUAACCCUU  AUGAAA [CCU-]  AAG--GGUCGAAG   GUGGA  UUUAG  CAGUA   AACUAAG  AGUAGAGUG  CUUAGUU   GAACAG  GG  CCC  U  GAAG-CGCGUACA  
Taxon_08	[CAAGAACUCAACCCAA-] A   CGGAAGUCUCC  AUGAAA [UU--]  AGA--GACCGAAG   GAGGA  UUUAG  UAGUA   AAUUAAG  AAUAGAGAG  CUUAAUU   GAAUCA  GG  CCA  U  GAAG-CGCGCACA  
Taxon_09	[AACU-------------] A   CGAUAGCCCUC  AUGAAA [CCU-]  GAG--GGUCGAAG   GUGGA  UUUAG  CAGUA   AACUAAG  AGUAGAGUG  CUUAGUU   GAACAG  GG  CCC  U  GAAG-CGCGUACA  
Taxon_10	[CAUA-------------] A   CGAAUCAUAUU  AUGAAA [CUAA]  AAU--GCUUGAAG   GAGGA  UUUAG  UAGUA   AAUUAAG  AAUAGAGAG  CUUAAUU   GAAUUA  GG  CAA  U  AGGG-CGCGCACA  
Taxon_11	[AACA-------------] A   CGAAUUAUCUC  AUGAAA [CUU-]  GAGCAAUAUGAAG   GAGGA  UUUAG  UAGUA   AAUUAAG  AAUAGAGAG  CUUAAUU   GAAAUA  GG  CAA  U  AGGG-CGCGCACA  
Taxon_13	[UAUCCCUAUACAC----] A   CGAAAGUUUUU  AUGAAA [CUU-]  AAA--AACCAAAG   GAGGA  UUUAG  UAGUA   AAUCAAG  AGCAGAGUG  CUUGAUU   GAAUAA  GG  CCA  U  GAAG-CACGCACA  
Taxon_14	[AACC-------------] A   CGAUAACCCUC  AUGAAA [CUU-]  GAGC-GGUCGAAG   GAGGA  UUUAG  CAGUA   AAUUAAG  AAUAGAGUG  CUUAGUU   GAACAA  GG  CCC  U  GAAG-CGCGUACA  
Taxon_15	[AACU-------------] A   CGAUAACCCUC  AUGAAA [UUU-]  GAA--GGUCGAAG   GUGGA  UUUAG  CAGUA   AACUAAG  AGUAGAGUG  CUUAGUU   GAACAA  GG  CCC  U  GAAG-CGCGUACA  
Taxon_16	[AAUU-------------] A   CGAUAACCCUU  AUGAAA [CCU-]  AAG--GGUCAAAG   GUGGA  UUUAG  CAGUA   AACUAAG  AGUAGAGUG  CUUAGUU   GAACAG  GG  CCC  U  GAAG-CGCGUACA  
Taxon_18	[AACCCC-----------] A   CGAUAGCUCUU  AUGAAA [UCU-]  AGG--AGCCCAAG   GAGGA  UUUAG  CAGUA   AAUUAAG  AAUAGAGUG  CUUAAUU   GAACUA  GG  CCA  U  AAAG-CACGCACA  
Taxon_19	[UAU--------------] A   CGAAAAACCCU  AUGAAA [CU--]  AGA--GUCCCAAG   GAGGA  UUUAG  CAGUA   AGUUGAG  AAUAGAGAG  CUUAACU   GAACCG  GG  CAA  U  GAAG-CACGCACA  
Taxon_20	[CAU--------------] A   CGAAAAACUCU  AUGAAA [CU--]  AGA--GUAUUAAG   GAGGA  UUUAG  UAGUA   AGCCAAG  AAUAGAGAG  CUUGACU   GAACUG  GG  CAA  U  GAAG-CACGCACA  


[       	            38            39                            I(22)                               39'            38'                   40                 40'                                I(23)               ]
[		        t                                                                                                                  t                                           *                                       ]
Cow			CA  C  C  GCCCGUC  ACC  CUCCUC  AA [AUAGAUUCAGUGCAUCUAACCCUAUUUAAACGCACUAGCUACAUGA------]  GAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGCAUACU  GGAA  AGUGUGCUUG   GA UAAAU [CAAGAUAUAGCUUAAAC-------------------] 
Taxon_01	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAUA------]  GAGGAG  ACAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA CGAAC [CAGAGUGUAGCUUAACAC------------------] 
Taxon_02	CA  C  C  GCCCGUC  ACC  CUCCUU  AA [AUAUCAUAAACCACAACACAACAUAUUAACGUACGUUGAACAUAUAA-----]  AAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGUGUACU  GGAA  AGUGCGCUUG   GA UAA-U [CAAAGUGUAGCUUAAAC-------------------] 
Taxon_03	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUCUAUAUA------]  GAGGAG  AUAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA CGAAC [CAGAGUGUAGCUUAACAC------------------] 
Taxon_04	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUACCCCAGCUAUAAACCCCAGUUCGUUAACUCAGGCCAAGCAAUUAUACGA]  GAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGCAUACC  GGAA  GGUGUGCUUG   GA CAAAA [CAAGAUAUAGCUUAAAC-------------------] 
Taxon_06	CA  C  C  GCCCGUC  ACC  CUCCUU  AA [AUAUCACAAAUCAUAACAUAACAUAAAACCGUGACCCAAACAUAUGA-----]  AAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGUAUACC  GGAA  GGUGUACUUG   GA UAA-C [CAAAGUGUAGCUUAAAC-------------------] 
Taxon_07	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUAUACUUCAAAGGAUAUUUAACUUAAACCCCUACGCAUUUAUAUA------]  GAGGAG  AUAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA CGAAC [CAGAGUGUAGCUUAACAU------------------] 
Taxon_08	CA  C  C  GCCCGUC  ACC  CUCCUU  AA [AUAUUACAAAUCACAAUAUUACACAAAACCAUGAUCCAAACAUAUGA-----]  AAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGUAUACC  GGAA  GGUGUACUUG   GA UAA-C [CAAAGUGUAGCUUAAAC-------------------] 
Taxon_09	CA  C  C  GCCCGUC  ACC  CUCUUC  AA [GUAUAUUUCAGGGACUACCUAACUAAAACCCCCACGCAUCUAUAUA------]  GAGGAG  GCAA  GUCGUAAC  AU  G  G   UAAGCGUACU  GGAA  AGUGCGCUUG   GA CGAAC [CAGAGGGUAGCUUAACAC------------------] 
Taxon_10	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [CAUAAUAAUCCAACAUACCUAAUACAAUUAUUCAUUAAA-------------]  GAGGAG  AAAA  GUCGUAAC  AC  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA AUA-U [CAAAAUGUAGCUUGAUUUAUU---------------] 
Taxon_11	CA  C  C  GCCCGUC  ACC  CUCCUC  GA [CAAAACCUUGCAAAUAACUAAUAAAAAUAAACACAAA---------------]  GAGGAG  AAAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA ACA-U [CAAAAUGUAGCUUAACAU------------------] 
Taxon_13	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUACCCCAGCUAAAGCCACAGUUCAUUAACUCAGGCCAAGCAACUUAUACGA]  GAGGAG  ACAA  GUCGUAAC  AA  G  G   UAAGCAUACC  GGAA  GGUGUGCUUG   GA CAAAA [CAAGAUAUAGCUUAAAC-------------------] 
Taxon_14	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GCAUAUUUCAAGGAACCCCUAACUAAAUACUCCACGCAUCUAUGUA------]  GAGGAG  ACAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA CAAAC [CAAGGUGUAGCUUAACAC------------------] 
Taxon_15	CA  C  C  GCCCGUC  ACC  CUCUUC  AA [GUAUAUUUCAGGGACUACCUAACUAAAACCCCCACGCAUCUAUAUA------]  GAAGAG  GCAA  GUCGUAAC  AU  G  G   UAAGCGUACU  GGAA  AGUGCGCUUG   GA CGAAC [CAGAGAGUAGCUUAAUAC------------------] 
Taxon_16	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [GUAUACUUCAAAGGAUACUUAACUUAAACCCCCUACGUAUUUAUAUA-----]  GAGGAG  AUAA  GUCGUAAC  AU  G  G   UAAGUGUACU  GGAA  AGUGCACUUG   GA CGAAC [CAGAGUGUAGCUUAACAU------------------] 
Taxon_18	CA  C  C  GCCCGUC  ACU  CCCCUC  AA [AUAUAUUUAAGGAAUAACUUAACUAAAUGCCCUAACAUUUAUAUA-------]  GAGGGG  AUAA  GUCGUAAC  AC  G  G   UAAGUGUACU  GGAA  GGUGCACUUG   GA UAAAU [CAAGGUAUAGCUUAAUAUAAAGCAU-----------] 
Taxon_19	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [CCAGUAACACCCCAAUCCCUAAUACAAAAUACUAAACAA-------------]  GAGGAG  AUAA  GUCGUAAC  AA  G  G   UAAGCAUACC  GGAA  GGUGUGCUUG   GA AUA-U [CAAAAUGUAGCUUAAUCCAAAGCACUCAGCUUACAC] 
Taxon_20	CA  C  C  GCCCGUC  ACC  CUCCUC  AA [UCAAGCAACACAAACAUUCCUAAAAUCCCAACGCUUUUCAA-----------]  GAGGAG  AUAA  GUCGUAAC  AA  G  G   UAAGCAUACC  GGAA  GGUGUGCUUG   GA AUA-U [CAAAAUGUAGCUUAACCCAAAGCACUCAGCUUACAC] 



[16S                       I(0)                2     I(1)     3        4                              I(2)                                11        11'       I(3)            13                13'         I(4)          4'          I(5)          23        23'     I(6)   3'              I(7)        2'                     D2  ]
[                                                                *                                                                                                                              *                                                                  -                   -                              *  t          ]
Cow			[-UUCAUUAUGAAUAUCUUGA-----------]  AC  [UAGA--]  CC  -UA  GCCC  [AAAGAUACCCUCUCGACUAAACAACCAAGAUAGAAUAAAAC----------------]   AA  AACA  UU   [UAAUCCCAAUUU--]   AAAGUAUA  GGAGA  UAG-AAAU   [CUAAGUAC----]  GGCGC  UAUAG [AGAA-] AGUA   CC  GCAA  GG   G [AAC-]  GA  UGAAAGA [AAAAAACUAAAA]  GU  AUAAAAAAG-  C  A   AAG   
Taxon_01	[ACUUAACUUGACCGCUCUGA-----------]  GC  [UAAA--]  CC  -UA  GCCC  [CAAACCCACUCCACCUUACUACCAGACAACCUUAGCC--------------------]   AA  ACCA  UU   [UACCCAAAU-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UGAAACCU----]  GGCGC  AAUAG [AUAU-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [UUAUAACCAA--]  GC  AUAAUAUAG-  C  A   AGG   
Taxon_02	[-UACAAAAUGACCACUUUGA-----------]  AC  [CAAA--]  GC  -UA  GCCC  [AAACAAAUCCUAACCCAACUACCACUAAGCCCACUUAAAC-----------------]   AA  AACA  UU   [CACUUAAACCCACU]   AAAGUAUA  GGAGA  UAG-AAAU   [UUUAAUC-----]  GGCGC  UAUAG [AAAA-] AGUA   CC  GCAA  GG   G [AAC-]  GA  UGAAAGA [AAUUUUAAAA--]  GU  ACCAAACAG-  C  A   AAG   
Taxon_03	[ACUCAACUUGACCGCUCUGA-----------]  GC  [AAAA--]  CC  -UA  GCCC  [CAAACCCACCCCACAUUACUACCAAACAACUUUAAUC--------------------]   AA  ACCA  UU   [UACCCAAAU-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UGUAAAUC----]  GGCGC  AAUAG [AUAU-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [AUAUAACCAA--]  GC  ACGACACAG-  C  A   AGG   
Taxon_04	[-CAGCCCGUGUAUAUCUUGA-----------]  AC  [UAGC--]  CC  -UA  GCCC  [ACACCCUCCCCACCUCUACUACCACAAAUCAAUCAAAU-------------------]   AA  AACA  UU   [UACCAUCCCUUC--]   AAAGUAUA  GGAGA  UAG-AAAU   [UUAAAUAUCAGU]  GGCGC  UAUAG [AGAU-] AGUA   CC  GUAA  GG   - [AAA-]  GA  UGAAAGA [AAAACCUAAAA-]  GU  AAUAAAAAG-  C  A   AAG   
Taxon_06	[-CUCAAAAUGAACACUUUGA-----------]  AC  [UAAA--]  GC  -UA  GCCC  [AAACAAUACCUAAUUCAAUUACCCUUAGUCACUUAACU-------------------]   AA  AACA  UU   [CACCAAACCAUU--]   AAAGUAUA  GGAGA  UAG-AAAU   [UUUAACUU----]  GGCGC  UAUAG [AGAA-] AGUA   CC  GUAA  GG   G [AAC-]  GA  UGAAAGA [UGCAUUAAAA--]  GU  ACUAAACAG-  C  A   AAG   
Taxon_07	[ACUCAACUUGACCACUCUGA-----------]  GC  [CAAA--]  CC  -UA  GCCC  [CAAACCCCCUCCACCCUACUACCAAACAACCUUAACC--------------------]   AA  ACCA  UU   [UACCCAAAU-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UGUAAAUC----]  GGCGC  AAUAG [AUAU-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [UUACACCCAA--]  GC  AUAAUACAG-  C  A   AGG   
Taxon_08	[-CUCAGAGUGAACACUUUGA-----------]  AC  [UAAA--]  GC  -UA  GCCC  [AAACAAUACCCAACUCAACUACCCUUAGUCACUUAACU-------------------]   AA  AACA  UU   [CACCAAACCAUU--]   AAAGUAUA  GGAGA  UAG-AAAU   [UUUAACUU----]  GGCGC  UAUAG [AGAA-] AGUA   CC  GUAA  GG   G [AAC-]  GA  UGAAAGA [UGUAUUAAAA--]  GU  ACUAAACAG-  C  A   AAG   
Taxon_09	[AUUCAACCUGGCCCCUCUGA-----------]  GC  [UAAC--]  CC  -UA  GCCC  [CAAACCCAACCCACCCUACUACCAACCAACCCUAACC--------------------]   AA  ACCA  UU   [CACCCAAAC-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UACAAUCC----]  GGCGC  AAUAG [ACAC-] AGUA   CC  GUAA  GG   G [AAA-]  GA  UGAAAAA [ACACAACCAA--]  GC  ACAACAUAG-  C  A   AGG   
Taxon_10	[GUCUAAUCUGACCAUUUUGA-----------]  AC  [UAAC--]  CA  -CA  GCCC  [UAAAAUCAUAUCAAAUUAACUAACUACUUUUUCAAUUU-------------------]   AA  ACCA  UU   [UUAAUUAUC-----]   CUAGUAUA  GGUGA  UAG-AAAA   [GAUAUAAUA---]  GGAGC  UAUAG [UUUAU] AGUA   CC  GCAA  GG   G [AAA-]  AA  UGAAAGA [UAAAUUAUA---]  GU  AAUUAAAAG-  C  A   AAG   
Taxon_11	[GCUAAUCCUGACCAUUUUGA-----------]  GC  [CAAU--]  UU  -AA  GCCC  [AUCCAACUAUCAAAUCAAAUAUCACAAACACCUAAUCU-------------------]   AA  ACCA  UU   [CAACCUGUC-----]   UAAGUAUA  GGUGA  UAG-AAAA   [GACUGACUCCA-]  GGCGC  AAUAA [CGCA-] AGUA   CC  GCGA  GG   G [AAA-]  CA  UGAAAGA [CUAAUUAUAA--]  GC  ACUAAAAAG-  C  A   AAG   
Taxon_13	[-CAGCCCGUGCAUAUCUUGA-----------]  AC  [CAGC--]  UC  -UA  GCCC  [ACCCCCACCCCCCUUUUACUACCAUAGACCAAUCAAAU-------------------]   AA  AACA  UU   [CACCAACCUUCU--]   AAAGUAUA  GGAGA  UAG-AAAU   [UUAAACAUCAGU]  GGCGC  UAUAG [AAAU-] AGUA   CC  GUAA  GG   G [AAA-]  GA  UGAAAGA [AAAACCCAAAA-]  GU  AAUAAAAAG-  C  A   AAG   
Taxon_14	[-AUUAACUUGACCACCCUGA-----------]  GC  [CAAC--]  CC  -UA  GCCC  [CAAAUCACCCCAACCCUACUAUCAAGUAACAUCAACC--------------------]   AA  ACCA  UU   [UACCCGUAC-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UACCAACCU---]  GGCGC  AAUAG [AUAC-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [CACGACCAA---]  GC  ACAAAACAG-  C  A   AAG   
Taxon_15	[AUUCAACCUGACCCCUCUGA-----------]  GC  [UAAU--]  CC  -UA  GCCC  [CGAACCCAAUCCACCCUACUACCAAAUCAACCUUAACC-------------------]   AA  ACCA  UU   [CACCCAAGC-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UAUAAUCC----]  GGCGC  AAUAG [AUGC-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [ACGAAACCAA--]  GC  ACAACACAG-  C  A   AGG   
Taxon_16	[ACUCAACUUGACCACUCUGA-----------]  GC  [CAAA--]  CC  -UA  GCCC  [CAAACCCCCUCCACCCUACUACCAAACAACCUUAACC--------------------]   AA  ACCA  UU   [UACCCAAAU-----]   AAAGUAUA  GGCGA  UAG-AAAU   [UGUAAACC----]  GGCGC  AAUAG [ACAU-] AGUA   CC  GCAA  GG   G [AAA-]  GA  UGAAAAA [UUAUACCCAA--]  GC  AUAAUACAG-  C  A   AGG   
Taxon_18	[CUGACUUACACUCAGAAGAUCUAACAUU---]  GC  [UU----]  GG  -UG  ACCU  [UGAGCCAACACUAGCUCCAAGCACAACCAACACUAAUAUCAAACCCACAUGUAUACC]   AA  ACCA  UU   [AACCCAUAU-----]   UAAGUAUA  GGCGA  UAG-AAAU   [CUUAACCU----]  GGCGC  UAUAG [AUAC-] AGUA   CC  GUAA  GG   G [AAAG]  AC  AAGAAA- [ACCACCCAA---]  GC  ACAAAACAG-  C  A   AGG   
Taxon_19	[CUGAAAGAUAUUUUACAUAAAUCAUUUUGA-]  GC  [CUUAAC]  UC  UUA  GCCC  [AAAUCAACACAAUCAACCUAUGUAUUUCAACAAACU---------------------]   AA  AACA  UU   [UUAACAUCAACCC-]   CUAGUAUU  UGAGA  CAG-AAAG   [GAAUAACC----]  GGAGC  UUUAG [AUAA-] AGUA   CU  GUGA  AG   G [AACA]  AA  UGAAAG- [AUUUCCCCAA--]  GC  ACGAAAAAG-  C  C   AAG  
Taxon_20	[CUGAAAGAUAUUUAUCACAAAAUCAUUUUGA]  GC  [CAAC--]  UC  -UA  GCCC  [AAAUUAAUCUUAAUACACAUAUAAACUCUAAUAAACU--------------------]   AA  AACA  UU   [UUAACGCUAACCC-]   CUAGUAUA  GGAGA  UAGAAAAG   [GAAAUU------]  GGAGC  CUUAG [ACAU-] AGUA   CU  GUGA  AG   G [AAA-]  AA  UGAAAG- [AUUAGCUUAAA-]  GC  ACAAAAAAG-  C  C   AGG  


[                 I(8)   D2'        H88              H88'     26          I(9)        27   I(10)  29         29' I(11)    27'    I(12)  31a          32              33            34    I(13)    34'            35                       35'              33'           35a         35a'            32'           31a'        36   ]
[                                                *                                                    *                                                                                                                     t                                                                                                       ]
Cow			AUU [ACCC]  CUU   GU   ACCU  UUUGCAUA-  AUGA    AUUAAC  UAG [UAUAAGA]   CUUAAC  [AA]  AA  -UGAA  UU  [UUA]  GCUAAG   [CAG]  CCCG  AAA  CCAGAC  GAG  CUACUCACAAAC  A   GUUU  [ACCAA]  GAAC   UAA   CUCAUCUAU  G  U  GGCAAA  AUAGUGAG   AA  GAUUUGUAAGUAG  A   GGU  GACAU  GCC   UAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAG   
Taxon_01	ACU [AACC]  CCU   AU   ACCU  UCUGCAUA-  AUGA    AUUAAC  UAG [AAAUAA-]   CUUUGC  [AA]  GG  -AGAG  CC  [AAA]  GCUAAG   [ACC]  CCCG  AAA  CCAGAC  GAG  CUACCUAAGAAC  A   GCUA  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUUAUAGGUAG  A   GGC  GACAA  ACC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_02	CUC [ACCC]  CUU   UU   ACCU  UUUGCAUA-  AUGA    UUUAAC  UAG [AACAAU-]   UUUAGC  [AA]  AG  -AGAA  CU  [UAA]  GUUAAA   [CAC]  CCCG  AAA  CCAGAC  GAG  CUACCUAUGAAC  A   GUUC  [AAA--]  AAAC   AAA   CUCGUCUAU  G  U  AGCAAA  AUAGUGAG   AA  GAUUUAUAGGUAG  A   GGU  GAAAA  GCC   UAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_03	ACU [AACC]  CCU   GU   ACCU  UCUGCAUA-  AUGA    AUUAAC  UAG [AAAUAA-]   CUUUGC  [AA]  AG  -AGAA  CC  [GAA]  GCUAAG   [ACC]  CCCG  AAA  CCAGAC  GAG  CUACCUAAGAAC  A   GCUA  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUCCUAGGUAG  A   GGC  GACAA  ACC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_04	CUU [ACCA]  CUU   GU   ACCU  UUUGCAUA-  AUGA    CUUAAC  UAG [UAAUAA-]   AUUAGC  [AA]  AG  -AGAC  CU  [UAA]  GUUAAA   [UUA]  CCCG  AAA  CCAGAC  GAG  CUACUUAUGAGC  A   GCAC  [CUA--]  GAAC   GAA   CUCAUCUAU  G  U  GGCAAA  AUAGUGAG   AA  GACUUAUAAGUAG  A   GGU  GAAAA  GCC   UAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCCU   
Taxon_06	CUU [ACCC]  CUU   UU   ACCU  UUUGCAUA-  AUGA    UUUAAC  UAG [AAUAAA-]   CUUAGC  [AA]  AG  -AGAA  CU  [UAA]  GCUAAG   [CAC]  CCCG  AAA  CCAGAC  GAG  CUACCUAUGAAC  A   GUUA  [CAAAU]  GAAC   CAA   CUCAUCUAU  G  U  CGCAAA  AUAGUGAG   AA  GAUUCGUAGGUAG  A   GGU  GAAAA  GCC   CAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAG   
Taxon_07	ACU [AACC]  CCU   GU   ACCU  UUUGCAUA-  AUGA    AUUAAC  UAG [AAAUAA-]   CUUUGC  [AA]  AG  -AGAA  CU  [AAA]  GCCAAG   [AUC]  CCCG  AAA  CCAGAC  GAG  CUACCUAAGAAC  A   GCUA  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUUAUAGGUAG  A   GGC  GACAA  ACC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_08	CUU [ACCC]  CUU   UU   ACCU  UUUGCAUA-  AUGA    UUUAAC  UAG [AAUAAA-]   CUUAGC  [AA]  AG  -AGAA  CU  [UAA]  GCUAAG   [CAC]  CCCG  AAA  CCAGAC  GAG  CUACCUAUGAAC  A   GUUA  [UAAA-]  GAAC   CAA   CUCAUCUAU  G  U  CGCAAA  AUAGUGAG   AA  GAUUCAUAGGUAG  A   GGU  GAAAA  GCC   CAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAG   
Taxon_09	ACU [AACC]  CCU   GU   ACCU  UUUGCAUA-  AUGA    AUUAAC  UAG [AAACAA-]   CUUUGC  [AA]  GG  -AGAG  CC  [AAA]  GCCAAG   [ACC]  CCCG  AAA  CCAGAC  GAG  CUACCCAUAAAC  A   GCUA  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUUAUGGGUAG  A   GGC  GACAA  ACC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_10	AUU [AACU]  CUU   GU   ACCU  UUUGCAUA-  AUGA    UUUAGC  CAG [UCAAC--]   ACGGAC  [A-]  AA  AAGAA  UU  [AU-]  GCCCGA   [CAU]  CCCG  AAA  UUAAGU  GAG  CUACUAUAAGAC  A   GUUA  [CUAAU]  GAAC   CAA   CUCAUCUAU  G  U  AGCAAA  AUAGUGAG   AA  GAUUUUAUAGUAG  A   AGU  GAAAA  ACC   UAUCGA  ACUUAA  UGAUAG  CUGG  UU  AUCCAA   
Taxon_11	AUU [AAAC]  CUU   CU   ACCU  UUUGCAUA-  AUGA    UUUAGC  CAG [UCAAA--]   CCGGAC  [A-]  AA  AAGAA  UU  [AC-]  GCCCGC   [CUU]  CCCG  AAA  UCAAGU  GAG  CUACUAUAAAAC  A   GUUG  [ACA--]  GAAC   CAA   CUCAUCUAU  G  U  AGCAAA  AUAGUGAG   AA  GAUUUUAUAGUAG  A   GGU  GAAAA  GCC   UACCGA  ACUUGA  UGAUAG  CUGG  UU  GUCCAA   
Taxon_13	CUU [ACCC]  CUU   GU   ACCU  UUUGCAUA-  AUGA    CUUAAC  UAG [UAAUAA-]   CUUAGC  [AA]  AG  -AGAC  CU  [UAA]  GUUAAA   [CUA]  CCCG  AAA  CCAGAC  GAG  CUACUUAUGAGC  A   GUAC  [CUA--]  GGAC   GAA   CUCAUCUAU  G  U  GGCAAA  AUAGUGAG   AA  GACUUAUAAGUAG  A   GGU  GAAAA  GCC   UAACGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAU   
Taxon_14	AUA [AACC]  CCU   GU   ACCU  UCUGCAUA-  AUGA    AUUAAC  UAG [ACACAA-]   CUUAGC  [AA]  GG  -AGGC  CC  [AAA]  GCUAAG   [AGC]  CCCG  AAA  CCAGAC  GAG  CUACCUAAGAAC  C   GCUG  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUCAUAGGUAG  A   GGU  GACAA  GCC   UACCGA  GCCUGG  CGAUAG  CUGG  UU  GUCCAA   
Taxon_15	AUU [AACC]  CCU   GU   ACCU  UUCGCAUA-  AUGA    AUUAAC  UAG [AAACAA-]   CUUUGC  [AA]  GG  -AGAA  CC  [GAA]  GCCAAG   [ACC]  CCCG  AAA  CCAGAC  GAG  CUACCCAUAAAC  A   GCUA  [AAA--]  GAGC   GCA   CCCGUCUAU  G  U  GGCAAA  AUAGUGGG   AA  GAUUUAUGGGAUG  A   GGC  GACAA  ACC   AUCCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_16	ACU [AACC]  CCU   GU   ACCU  UUUGCAUA-  AUGA    AUUAAC  UAG [AAAUAA-]   CUUUGC  [AA]  AG  -AGAA  CC  [AAA]  GCUAAG   [ACC]  CCCG  AAA  CCAGAC  GAG  CUACCUAAGAAC  A   GCUA  [AAA--]  GAGC   ACA   CCCGUCUAU  G  U  AGCAAA  AUAGUGGG   AA  GAUUUAUAGGUAG  A   GGC  GACAA  ACC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  GUCCAA   
Taxon_18	ACU [AACC]  CCU   GU   ACCU  UUUGCAUA-  AUGA    AUUAGC  CAG [AAACAA-]   UUUCAC  [AA]  AG  -AGAA  CU  [GAA]  GCCAAA   [UUC]  CCCG  AAA  CCAGAC  GAG  CUACCCAAAAAC  A   GCUG  [AAA--]  GAGC   GCA   CCCGUCUAU  G  U  GGCAAA  AUAGUGGG   AA  GAUUUCUGGGUAG  A   GGU  GACAA  GCC   UACCGA  GCCUGG  UGAUAG  CUGG  UU  AUCCAA   
Taxon_19	UUU [AAAU]  CUU   GU   ACCU  UUUGCAUAA  AUGG    UUUAGC  UAG [AAAAU--]   CUAUAC  [AC]  AA  -AGAU  UU  [GUA]  AUAUAA   [AAC]  CCCG  AAA  CUAAAU  GAG  CUACUAUAGGAC  A   AUUU  [AUCA-]  GAAU   GCA   CCCGUCUAU  G  U  CGCAAA  AUAGUGGG   AC  GAUUUUAUAGUAG  A   GGU  GAAAA  AUC   AACCGG  AUUUAG  UGAUAG  CUGG  UU  AACCAA  
Taxon_20	AUU [UAAC]  CCU   GU   ACCU  UUUGCAUA-  AUGG    UUUAGC  UAG [AAAAC--]   UUAUAU  [AC]  AA  -AGAA  UU  [UUA]  AUAUAA   [AAU]  CCCG  AAA  CUAGAU  GAG  CUACUAUCGAGC  A   AUUU  [AUUA-]  GAAU   CAA   CCCGUCUAU  G  U  UGCAAA  AUAGUGGG   AU  GACUUUAUAGUAG  A   GGU  GAAAA  AUC   AACCGG  ACCUAG  UGAUAG  CUGG  UU  AGCCAA  


[            I(14)    37           37'    I(15)       38                   I(16)                    38'                 39                   39'      I(17)    40 I(17.5)     40'                         I(18)                   43                      43'                44       I(19)       44'              I(20)          ]
[                                                        *                                                                                                                                                                                        t    *                         t              t  *                              ]
Cow			[AAAA]   UGAAU  CUAA  GUUCA   [GC-]  UUUAAAGA-UAC  [CAAAAAUUCAAAUAAACCCCACU------]  GUAGCUUUAAA  AGUUA   GUCUAAAAAG  GUACAG  CCUUUUAGAA   [AC--]   GG  [AUA] CAA  CC   UUGACUAGAGAGUAA [AAUUUAACACUA-------] CCA   UAGUAGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UA] AA  G  -CUC   [AACAACAAAAAUUAAAUAGA--] 
Taxon_01	[GAU-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UGC  [CCACAGAACCCUCUAAAUCCCCUU-----]  GUAAAUUUAAC  UGUUA   GUCCAAAGAG  GAACAG  CUCUUUGGAC   [ACUA]   GG  [AAA] AAA  CC   UUGUAGAGAGAGUAA [AAAAUUUAACAC-------] CCA   UAGUAGGCC  UAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACACCCACUACCUAAAAAA--] 
Taxon_02	[GUC-]   AGGAU  AUAA  GUUCA   [AA-]  UUUAAAUU-UAC  [CUAAAAGCCCCAACAACUCUAAU------]  GUAAAUUUAAA  UUAUA   AUCUAAAAAG  GUACAG  CUCUUUAGAU   [UCA-]   GG  [AUA] CAA  CC   UCAGUUAGAGAGUAA [GAUCAGAAUUAC-------] ACA   UAGUUGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [CU] AA  G  -CUC   [AACAACACAACUACCUUAA---] 
Taxon_03	[GAC-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UAC  [CCACAGAACCCUCCAAAUCCUCCC-----]  GUAAAUUUAAC  UGUUA   GUCCAAAGAG  GAACAG  CUCUUUGGAC   [ACUA]   GG  [AAA] AAA  CC   UUGUAAAGUGAGUAA [AAAAUUUAAUAC-------] CCA   UAGUAGGCC  UAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACA-CUAUCACCCAAAAUAA-] 
Taxon_04	[GAAA]   AGAAU  CUCA  GUUCA   [AC-]  AUUAAAUAAUAC  [UAAAAGCCCAUGCCAAGCCUUAAC-----]  GUAUAUUUAAC  UGUUA   AUCUAAAAAG  GUACAG  CUUUUUAGAA   [AU--]   GG  [GUA] CAA  CC   UUGACUAGAGAGUAA [AAUCAAACAUAA-------] ACA   UAGUUGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [GACAACAAAAUAAUGUUUUAA-] 
Taxon_06	[AAAC]   AGAAU  UUCA  GUUCA   [AA-]  UUUAAAUU-UAC  [CUAAAAACUACUCAAUUCUAAU-------]  GUAAAUUUAAA  UUAUA   GUCUAAAAAG  GUACAG  CUUUUUAGAU   [ACA-]   GG  [UUA] CAA  CC   UUCAUUAGAGAGUAA [GAACAAGAUAAAC------] CCA   UAGUUGGCU  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACGACACAUCUAUCUUAA---] 
Taxon_07	[GAU-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UAC  [CUACAGAACCCUCUAAAUCCCCCU-----]  GUAAAUUUAAC  UGUUA   GUCCAAAGAG  GAACAG  CUCUUUAGAC   [ACUA]   GG  [AAA] AAA  CC   UUAUGAAGAGAGUAA [AAAAUUUAAUGC-------] CCA   UAGUAGGCC  UAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACACCCACAACCUCAAAAAA-] 
Taxon_08	[AAAC]   AGAAU  CCCA  GUUCA   [AA-]  UUUAAAUU-UAC  [CUAAAAACCACUUAAUUCUAAU-------]  GUAAACUUAAA  UUAUA   GUCUAAAAAG  GUACAG  CUUUUUAGAU   [ACA-]   GG  [AUA] CAA  CC   UUUAUUAGAGAGUAA [GAAUAAGAUUAAUC-----] CCA   UAGUUGGCU  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACGUCACACAUAUCUUAA---] 
Taxon_09	[GAC-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UAC  [UUACAGAACCCCUAAUCCCCUC-------]  GUAAAUUUAAU  UGCUA   GUCUAAAGAG  GAACAG  CUCUUUAGAC   [ACUA]   GG  [AAA] AAA  CC   UUAAAAAGAGAGUAA [AAAACACAACAC-------] CCA   UAGUGGGCC  CAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [GACACCUAAACACCAAAAAA--] 
Taxon_10	[AAA-]   AGAAU  UUAA  GUUCA   [AC-]  UUUAAGUCCUAU  [UACAAUGCCUAUUCAAAGCACACA-----]  AUAAGCUUAAA  AGUUA   GUCAAAGAAG  GGACAA  CUUCUUUGAC   [CAA-]   GU  [AUA] CAA  AC   UACAUUAGAGGGUAA [UAAUUAAUAAUCC------] ACA   UCGUUGGCU  UAAAAG  C   A-GCCAUCAA   CUAA   GAAAG  C  GU [UA] AA  G  -CUC   [AAACUCACAUUCCAAUUUAA--] 
Taxon_11	[AAUA]   UGAAU  UUCA  GUUCA   [AC-]  UUUAAAUU-UAA  [UUAAAUUACCAACAAACUUAAC-------]  UUAAAUUUAAA  AGCUA   AUCAAAAGGG  GGACAA  CUCUUUUGAU   [CAU-]   GU  [AAA] CAA  AC   UUUAUUAGAGGAUAA [UGAAUACUAAGAA------] CCA   UUGUAGGCC  CAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UA] AA  G  -CUC   [AAAUGUAUUAACAGACCUUAA-] 
Taxon_13	[GAAA]   AGAAU  CUCA  GUUCA   [AC-]  AUUAAAUGAUAC  [UAAAAGCCAUGCCAAGCCUUGAC------]  GUACAUUUAAC  UGUUA   GUCUAAAAAG  GUACAG  CUUUUUAGAU   [AU--]   GG  [GUA] CAA  CC   UUCACUAGAGAGUAA [AACCAAACAUACA------] CCA   UAGUUGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [GACAAUAAAACAAUGUUUUAA-] 
Taxon_14	[GAC-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUC-UAC  [CCGUAGAACCCCUAAAUCUUCUU------]  GUAAAUUUAAC  UGUUA   GUCUAAAGAG  GAACAG  CUCUUUAGAC   [UCUA]   GG  [AAA] AAA  CC   UUAUAAAGAGAGUAA [AAAGUGUAAACC-------] CCA   UAGUUGGCC  UAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACACCACCUAUCCAACAAA--] 
Taxon_15	[GAC-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UAC  [UUACAGAGUCCCUAAUCCCCUC-------]  GUAAAUUUAAC  UGCUA   GUCUAAAGAG  GAACAG  CUCUUUAGAC   [ACUA]   GG  [AAA] AAA  CC   UUAAAAAGAGAGUAA [AAAACACAGCAC-------] CCA   UAGUGGGCC  CAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [GACACCCAAACACCAAAAAA--] 
Taxon_16	[GAU-]   AGAAU  CUUA  GUUCA   [AC-]  UUUAAAUU-UAC  [CUACAGAACCCUCUAAAUCCCCUU-----]  GUAAACUUAAC  UGUUA   GUCCAAAGAG  GAACAG  CUCUUUAGAC   [ACUA]   GG  [AAA] AAA  CC   UUGUAAAGAGAGUAA [AAAAUUUAACAC-------] CCA   UAGUAGGCC  UAAAAG  C   A-GCCACCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACACCCACAACCUUAAAGA--] 
Taxon_18	[GAU-]   AGAAU  CUUA  GUUCA   [GC-]  CUUAAGUU-UAC  [CCACAGAAUAACCCAAUCCCAAUCCCUCU]  GUAAACUUAAU  UGUUA   GUCUAAAGAG  GGACAG  CUCUUUAGAC   [ACUA]   GG  [AA-] AAA  CC   UUACAUAGAGAGUAA [AAACCCCCGUCA-------] CCA   UAGUUGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   GAAAG  C  GU [UC] AA  G  -CUC   [AACAUUAACCACCUAAAAAA--] 
Taxon_19	[GAAA]   UGAAU  UUAA  GUUCA   [AC-]  AGUAAGUU-UAU  [UUCCCUAGCACCCUAUAUGACUC------]  AUAAACUUACU  AGCUA   CUUAUAAGAG  GGUCAG  CCCUUAUAAG   [UAA-]   GG  [AAA] CAA  CC   UCCAAUAGAGGGAAA [CUCUUACCACGU-------] ACA   UAGUAGGCU  UAAAAG  C   A-GACACCUA   UUAA   GAAAG  C  GU [UA] AA  G  -CUC   [AAACCCAACCCUUUUCUCUAAU] 
Taxon_20	[AAAA]   CGAAU  UUAA  GUUCA   [AC-]  AAUAAGUU-UAU  [UUCCUGAUAUACUAUAUUAACC-------]  AUAAACUUAUA  AGUUA   UUCAUAAGAG  GGUCAG  CCCUUAUGAA   [UAAG]   GA  [AA-] CAA  CC   UCUAAUAGAGGGAAA [UUUAUUCUUAUUU------] ACA   UAGUAGGCC  UAAAAG  C   A-GCCAUCAA   UUAA   AAAAG  C  GU [UA] AA  G  -CUU   [AAACUUCAUUCUUUCUUAAU--] 


[                        I(21)                    I(22)       36'            46            46'                 26'                           I(23)     48     I(23.5)    49           51.1      50          I(24)          50'         I(25)    51                      I(26)                        51'     51.1'    59a        ]
[                                                                      *                          ----                t      - *  t                                                *-                                                                                                                                            ]
Cow			UUCCA [ACAACAAAUGAUUAA---] CUCCU [AGCCCCAAUA-]  CUGGAC  UAA-   UCUAUU  AUAG  AAUAGA   AGCAAUAAU  GUUAAU   A  UGAGUA-  AC  AAGAA [AAAUU-]  UUCU  C [CUU---]  GCAU  AAG U-C  UA  A   GUCAG  [UGCCUGAUAAUACU--]  CUGAC   CACU [AA-]   CAGU  [CAAUAAAAAUAAUCCAACAAUAAACAAUUUAUUGAUUAU----]  ACUG   U  UA  AC   CC  AACACA 
Taxon_01	UCCCA [AACAUAUAACUGAA----] CUCCU [CACACCCAA--]  UUGGAC  CAA-   UCUAUC  ACCC  UAUAGA   AGAACUAAU  GUUAGU   A  UAAGUA-  AC  AUGAA [AACAU-]  UCUC  C [UCC---]  GCAU  AAG C-C  UG  C   GUCAG  [AUCAAAACACUGAA--]  CUGAC   AAUU [AA-]   CAGC  [CCAAUAUCUACAAUCAACCAACAAGUCA-UUAUUACCCUC---]  ACUG   U  CA  AC   CC  AACACA 
Taxon_02	UUCCA [ACAAUAAUUAACCAA---] CUCCU [AACUUAAUA--]  CUGGAC  UAA-   UCUAUU  AAUA  AAUAGA   AGCAAUAAU  GUUAAU   A  UGAGUA-  AC  AAGAA [CUAU--]  UUCU  C [CUU---]  GCAU  AAG C-C  UA  U   AUCAG  [AACGAAUAACCA----]  CUGAU   AAUU [AA-]   CAAU  [AAGAUAAACACAAUCCAACAACAAACUACCUAUCAAAUCA---]  AUUG   U  UA  AC   CC  AACACA 
Taxon_03	UCCCA [AACACACAACUGAA----] CUCCC [UACACCCAA--]  UUGGAC  ????   ??????  ????  ??????   ?????????  ??????   ?  ???????  ??  ????? [??????]  ????  ? [??????]  ????  ??? ???  ??  ?   ?????  [????????????????]  ?????   ???? [???]   ????  [???????????????????????????????????????????]  ????   ?  ??  ??   ??  ?????? 
Taxon_04	UUCCA [ACAUUAAGUAAAUCAA--] CUCCU [AGCCUGACUA-]  UUGGAC  UAA-   UCUAUA  CAAA  UAUAGA   AGCAAUACU  GUUAAU   A  UGAGUA-  AC  AAGAA [AUUU--]  UUCU  C [CUA---]  GCAC  AAG C-U  UA  C   ACCAG  [UAACUGAUAAUAUA--]  CUGAU   AAUU [AA-]   CAGC  [AAAUAAAUAAAACCCAACACUAAAUUAUUUAUUAAAAU-----]  ACUG   U  UA  AC   CC  AACACA 
Taxon_06	UCCCA [ACAAUCAACCCAAACUAA] CUCCU [AAUCUCAUA--]  CUGGAC  UAU-   UCUAUC  AACA  CAUAGA   AGCAAUAAU  GUUAAU   A  UGAGUA-  AC  AAGAA [UUAU--]  UUCU  C [CUU---]  GCAU  AAG C-U  UA  U   AUCAG  [AACGAAUACUCA----]  CUGAU   AGUU [AA-]   CAAC  [AAGAUAGGGAUAAUCCAAAAACUAAUCAUCUAUUUAAACC---]  AUUG   U  UA  AC   CC  AACACA 
Taxon_07	UCCCA [AGCAUACAAGCGAA----] CUCCU [UACGCUCAA--]  UUGGAC  CAA-   UCUAUU  ACCC  CAUAGA   AGAGCUAAU  GUUAGU   A  UAAGUA-  AC  AUGAA [AACAU-]  UCUC  C [UCC---]  GCAU  AAG C-C  UA  C   UACAG  [ACCAAAAUAUUAAA--]  CUGAC   AAUU [AA-]   CAGC  [CCAAUAUCUACAAUCAACCAACAAGCCGUUAUUACCCCC----]  ACUG   U  UA  AC   CC  AACACA 
Taxon_08	UCCCA [AUAAUAGACUCAGACUAA] CUCCU [AAUCUUAUA--]  CUGGAC  UAU-   UCUAUC  GACA  CAUAGA   AGCAAUAAU  GUUAAU   A  UGAGUA-  AC  AAGAA [UUAU--]  UUCU  C [CUU---]  GCAU  AAG C-C  UA  U   AUCAG  [AACGAAUACUCA----]  CUGAU   AGUU [AA-]   CAAC  [AGAAUAGACACAAUCCAAAAACUAACCAUCUAUUUAGACU---]  AUUG   U  UA  AC   CC  AACACA 
Taxon_09	UACCA [AACACAAAACUGAA----] CUCCU [UACUCCCCA--]  UUGGAC  UAA-   UCUAUU  GCCC  CAUAGA   AGAAACAAU  GUUAGU   A  UAAGUA-  AC  AUGAA [GAUAU-]  UCUC  C [CCC---]  GCAU  AAG U-C  UA  C   GUCAG  [ACCGAAACAUCACA--]  CUGAC   AAUU [AA-]   CGGU  [CCAAUAUGCAUAGUUAACAAAUAAACUAUUAUUUUUUCCC---]  CCCG   U  UA  AU   CC  AACACA 
Taxon_10	UACCA [UAAAAAAACUAAAA----] CCCCU [AAAAUACUA--]  UUGGAU  GAU-   UCUAUG  AUAU  UAUAGA   AUACAUAAU  GCUAAA   A  UUAGUA-  AU  AAGAA [CCCCG-]  UUCU  C [CUC---]  GCAC  AAG C-C  UA  A   GUUAG  [AAUAACGGAUAUCCCA]  CUAAU   AGUU [AA-]   CAAA  [AACAUAAUAACAUUCAUCAACCAGCCUCUUAUACAAAAU----]  UUUG   U  UA  AU   CC  AACACA 
Taxon_11	UCCCA [AUAAUAUUAUCAAAA---] UCCCU [AACAUAGACUA]  UUGGAC  GAU-   UCUAUA  AUCU  UAUAGA   AGACAUAAU  GCUAAA   A  UAAGUA-  AC  AAGAA [AUAU--]  UUCU  C [CUA---]  GCAC  AAG C-C  UA  A   AUUAG  [CAACGGAAUACCCA--]  CUAAC   AAUU [AA-]   CAAA  [UCAAUAAUCCUAACCAAAUAACUAGUAAAAUUCUUACAACU--]  AUUG   U  UA  AC   CC  GACACA 
Taxon_13	UUCCA [ACAUUAGACAAAUCAA--] CUCCU [AGCAUGAUUA-]  UUGGAC  UAA-   UCUAUA  UAAA  CAUAGA   AGCAACACU  GUUAAU   A  UGAGUA-  AC  AAGAA [AUUU--]  UUCU  C [CUA---]  GCAC  GAG C-U  UA  U   AUUAG  [UAACUGAUAAUAUA--]  CUAAU   AAUU [AA-]   CAGC  [AAAUAAAUAAAAUCUAACACUAGACUAUUUAUUAAGAC-----]  ACUG   U  UA  AC   CC  AACACA 
Taxon_14	UCCCA [AACACACAACUGAA----] CUCCU [UCCACCACA--]  UUGGAC  CAA-   UCUAUC  AUUU  UAUAGA   AGAAAUAAU  GUUAGU   A  UAAGUA-  AC  AUGAA [UAACAU]  UCUC  C [CCC---]  GCAU  AAA C-C  UA  U   AUCAG  [ACCAAAAAACUUCG--]  CUGAC   AGUU [AA-]   CAGC  [CCAAUAUCUAAAACCAACUGAUAAACCAUUAUUGCCCAC----]  ACUG   U  CA  AC   CC  AACAUA 
Taxon_15	UACCA [AACAUAAGACUGAA----] CUCCU [UACUCCCAA--]  UUGGAC  CAA-   UCUAUU  GCCC  UAUAGA   AGAAACAAU  GUUAGU   A  UAAGUA-  AC  GUGAA [AACAU-]  UCUC  C [UCU---]  GCAU  AAG C-C  UA  C   GUCAG  [ACCAAAACAUCACA--]  CUGGC   AAUU [AA-]   CAGU  [CCAAUAUGCAUAAUUAACAAAUAAACUACUAUUACCCCC----]  ACUG   U  UA  AU   CC  AACACA 
Taxon_16	UCCCA [AACAUACAACCGAA----] CUCCU [UACACCCAA--]  UUGGAC  CAA-   UCUAUU  ACCC  CAUAGA   AGAACUAAU  GUUAGU   A  UAAGUA-  AC  AUGAA [AACAU-]  UCUC  C [UCC---]  GCAU  AAG C-C  UA  C   AUCAG  [ACCAAAAUAUUAAA--]  CUGAC   AAUU [AA-]   CAGC  [CUAAUAUCUACAAUCAACCAACAAGCCAUUAUUACCCCC----]  GCUG   U  UA  AC   CC  AACACA 
Taxon_18	UCCCA [AACAUACUAUUGAA----] CUCCU [UAAAUCACA--]  UUGGAU  UAA-   UCUAUC  ACCC  CAUAGA   AGCAAUAAU  GCUAGU   A  UAAGUA-  AC  AUGAA [CUCUCU]  CUCU  C [CCUACU]  GCAU  AAG C-C  UA  A   ACCAA  [ACCAAAACCCCA----]  CUGAU   ACUU [AA-]   CAGC  [CCAGUACUAACAAACUCAAACAAGUCCAUACUACUCUU-----]  ACUG   U  UA  AU   CC  AACACA 
Taxon_19	UCCAC [AAUAUCUCAACUA-----] CCCCU [AAAUCAAUA--]  UUGGUU  UAU-   UCUAUA  UCUU  UAUAGA   AGAAAUAAU  GCUAAA   A  UAAGUA-  AC  CAGAA [UUUA--]  UUCU  C [CUU---]  GCAC  UAG C-U  UA  A   GUUAG  [AACGGAACAACCA---]  CUAAC   AAUU [AA-]   CAGU  [UAAAUAAUUAAAACUAUAAACAAGAGCCAUUAUUUU-------]  UCUG   U  UA  AC   CC  GACACA 
Taxon_20	CCCUU [AACUUCUUAACUA-----] CCCCU [AAAAUAAUA--]  UUGGCU  UAA-   UCUAUG  UCCC  CAUAGA   AGAAAUAAU  GCUAAA   A  UAAGUAA  AC  CAGAA [UUUA--]  UUCU  C [CAU---]  GCAC  UAG C-U  UA  A   AUUAG  [AACGGAGCAUCCA---]  CUAAU   AAUU [AA-]   CAGC  [UAAAUAAUCAUAAAUAUUAACUAGAAACAUUAUUUUAUAA---]  ACUG   U  UA  AC   CC  GACACA 


[            59a'     49'    I(27)     48'              61                       I(28)    64            65                65'              66                 66             67           68       I(29)       I(30)68'         69              69'     70      70'                          71             71'                 ]
[                                                      -       -                                                  t                                               -                                                                                                         t                                       t           ]
Cow			 GG   A  GUGC  [AUCUA--]  AGGA  AA  GAUUAAAAGAAGUAAAAGG  AACUCGGCAAAC [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCCAGCAU  UCCCA  GUAUUGGAGG   CAUU  GCC  U   GCCCAGUGAC  [AACU-]  GUU [UA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCAUUU   GUUCUC  UAAAU  AAGGAC    U  UGUAUGAAU 
Taxon_01	 GG   C  AUGC  [UCAUA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [C-]  UUACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  CACCA  GUAUUAGAGG   CACC  GCC  U   GCCCAGUGAC  [ACAU-]  GUU [UA-] ACGGC    CGCGGU  ACCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCU  UAAAU  AGGGAC    C  UGUAUGAAU 
Taxon_02	 GG   C  AUGC  [ACUUCAA]  AGGA  AA  GAUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [AU]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  ACCCA  GUAUUAGAGG   CACU  GCC  U   GCCCAGUGAC  [AUCU-]  GUU [UCA] ACGGC    CGCGGU  AUCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUC  UAAAU  AAGGAC    U  UGUAUGAAU 
Taxon_03	 ??   ?  ????  [???????]  ????  ??  ???????????????????  ???????????? [??]  ????????  ??   ?????  ??  ?  ??  ?????   ???   ??????????  ?????  ??????????   ????  ???  ?   ??????????  [?????]  ??? [???] ?????    ??????  ??????  ??????     ?  ???  ?   ?????  ?  ?????????   ??????  ?????  ??????    ?  ?CAAUCUAU 
Taxon_04	 GG   C  GUGC  [AUUA---]  AGGA  AA  GAUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  AACCA  GUAUUAGA-G   CACU  GCC  U   GCCCGGUGAC  [UAAUC]  GUU [AA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUC  UAAUU  AGGGAC    U  UGUAUGAAU 
Taxon_06	 GG   C  AUGC  [AUCUAUA]  AGGA  AA  GAUUAAAAGAAGUAAAAGG  AACUCGGCAAAC [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UUCCA  GUAUUAGAGG   CACU  GCC  U   GCCCAGUGAC  [AUCU-]  GUU [UAA] ACGGC    CGCGGU  AUCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCC  UAAAU  AGGGAC    U  UGUAUGAAU 
Taxon_07	 GG   C  AUGC  [ACACA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAU [C-]  UUACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACCA  GUAUUAGAGG   CACC  GCC  U   GCCCGGUGAC  [AUAU-]  GUU [UA-] ACGGC    CGCGGU  ACCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCU  UAAAU  AGGGAC    U  UGUAUGAAU 
Taxon_08	 GG   U  GUGC  [ACCCAUA]  AGGA  AA  GAUUAAAAGAAGUAAAAGG  AACUCGGCAAAC [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UCCCA  GUAUUAGAGG   CACU  GCC  U   GCCCAGUGAC  [AUCU-]  GUU [UAA] ACGGC    CGCGGU  AUCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUC  UAAAU  AGGGAC    U  UGUAUGAAU 
Taxon_09	 GG   C  AUGC  [CUAUA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAU [C-]  UCACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACCA  GUAUUAGAGG   CACC  GCC  U   GCCCGGUGAC  [AUAC-]  GUU [UA-] ACGGC    CGCGGU  ACCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCU  UAAAU  GGGGAC    U  UGUAUGAAU 
Taxon_10	 GG   U  GUGC  [AUUAA--]  AGGA  AA  GAUAUAAAAGAACAAAAGG  AACUCGGCAAAC [AU]  GAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACAA  GUAUUAGAGG   CACU  GCC  U   GCCCAGUGAA  [UAAAC]  UUU [UA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUCUCC  UAAAU  AGGGAC    U  UGUAUGAAU 
Taxon_11	 GG   A  GUGC  [UAAC---]  AGGA  AA  GAUUAAAAGGAAUAAAAGG  AACUCGGCAAAU [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  AACAA  AUAUUAGAGG   CAAC  GCC  U   GCCCAGUGAG  [UAACA]  CUU [CA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUCUCU  UAAUU  AGAGAC    U  CGUAUGAAU 
Taxon_13	 GG   A  GUGC  [AUUA---]  AGGA  AA  GAUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [AC]  AAACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  AACCA  AUAUUAGA-G   CACU  GCC  U   GCCCGGUGAC  [UAAUC]  GUU [AA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUC  UAAUU  AAGGAC    U  UGUAUGAAC 
Taxon_14	 GG   C  AUGC  [CCACA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [A-]  CUACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACCA  GUAUUAGAGG   CACC  GCC  U   GCCCAGUGAC  [ACAU-]  GUU [CA-] ACGGC    CGCGGU  ACCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCU  UAAAU  GGGGAC    U  UGUAUGAAU 
Taxon_15	 GG   C  AUGC  [CCAUC--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAU [C-]  UCACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACCA  GUAUUAGAGG   CACC  GCC  U   GCCCGGUGAC  [AUGU-]  GUU [UA-] ACGGC    CGCGGU  ACCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUU  UAAAU  GAGGAC    U  UGUAUGAAU 
Taxon_16	 GG   C  AUGC  [CCACA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAU [C-]  UUACCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACCA  GUAUUAGAGG   CACC  GCC  U   GCCCGGUGAC  [AUAU-]  GUU [UA-] ACGGC    CGCGGU  ACCCUA  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCCU  UAAAU  AGGGAC    U  UGUAUGAAU 
Taxon_18	 GG   C  AUGC  [UUUUA--]  AGGA  AA  GGUUAAAAAAAGUAAAAGG  AACUCGGCAAAC [U-]  UAGCCCCG  CC   UGUUU  AC  C  AA  AAACA   UCA   CCUCUAGCAU  UACUA  GUAUUAGAGG   CACU  GCC  U   GCCCAGUGAC  [ACAC-]  GUU [UA-] ACGGC    CGCGGU  ACCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUUCUU  UAAAU  AGGGAC    U  CGCAUGAAU 
Taxon_19	 GG   C  GUGC  [ACUAA--]  AGGA  AA  GAUAAAAAAGAGUAAAAGG  AACUCGGCAAAU [UA]  GGAUUUCG  CC   UGUUU  AC  C  AA  AAACA   UCG   CCUCUAGCAU  AACAA  GUAUUAGAGG   UCCU  GCC  U   GCCCAGUGAU  [AUU--]  AUU [AA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCACUU   GUCUCC  UAAUU  AGAGAC    U  AGCAUGAAC 
Taxon_20	 GG   A  GUGC  [AUCUA--]  AGGA  AA  GAUUAAAAGGAGUAAAAGG  AACUCGGCAAAC [UA]  GGAUUUCG  CC   UGUUU  AC  C  AA  AAACA   UCG   CCUCUAGCAU  AACAA  GUAUUAGAGG   UCCU  GCC  U   GCCCAGUGAU  [UCU--]  AUU [AA-] ACGGC    CGCGGU  AUCCUG  ACCGUG     C  AAA  G   GUAGC  A  UAAUCAUUU   GUCUCC  UAAUU  AGAGAC    U  AGUAUGAAU 


[             67'           64'                  61'                                      72               72'                  73                   74            75         76             I(31)         76.1      I(32)     76.1'        I(33)             76'       75'         80          80'        81                ]
[                                                              t          t   t                                  -                   t                                      --------                                                                                                                                         ]
Cow		     GGC  CGCA  CGAGGGUUU  UACUG  UCUCUUACUUCCAAUC  A  GU  GAAAU  U   G  ACCU   UCCCGU  GAAGAG  GCGGGA   AUGCACA  AAUAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AACUA  A   CCAACCCA  [AAGAGAAUAGAUUUAA--]   CC  [AUUAA------]  GG   [AAUAACAACAAUCUCCA-]  UGAGUUGG    UAGUU  UC   GGUUG  GGG  UGACC     UCGGAG  AAUAAAAAAUC 
Taxon_01	 GGC  UCCA  CGAGGGUUC  AGCUG  UCUCUUACUUUUAACC  A  GU  GAAAU  U   G  ACCU   GCCCGU  GAAGAG  GCGGGC   AUGACAC  AGCAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AAUUU  A   UUAAUGCA  [AACAGUACCUAACAAA--]   CC  [CACA-------]  GG   [UCCUAAACUACCAAACC-]  UGCAUUAA    AAAUU  UC   GGUUG  GGG  CGACC     UCGGAG  CAGAACCCAAC 
Taxon_02	 GGC  CACA  CGAGGGUUU  UACUG  UCUCUUACUUUCAUAU  ?  ??  ?????  ?   ?  ????   ??????  ??????  ??????   ???????  ?????????  ?  ?????  ?????????????  ?  ?????  ?   ????????  [??????????????????]   ??  [???????????]  ??   [??????????????????]  ????????    ?????  ??   ?????  ???  ?????     ??????  ??????????? 
Taxon_03	 UAC  CCUA  CGAGGGUUC  AGCUG  UCUCUUACUUUUGACC  A  GU  GAAAU  U   G  ACCU   GCCCGU  GAAGAG  GCGGAC   AUAACAU  AACAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AAUUC  A   UUAAUGCA  [AGCAACACUUAAUAAA--]   CC  [CACA-------]  GG   [UCCUAAACUACCAAACC-]  UGCAUUAA    AAAUU  UC   GGUUG  GGG  CGACC     UCGGAG  UAUAAUCUAAC 
Taxon_04	 GGC  CACA  CGAGGGUUU  UACUG  UCUCUUACUUUUAAUC  A  GU  GAAAU  U   G  ACCU   CUCCGU  GAAGAG  GCGGAG   AUAACAA  AAUAAGACG  A  GAAGA  CCCUAUGGAGCUU  C  AAUUA  A   UCAACCCA  [AAAACCAUAACCUUAAA-]   CC  [ACCAAG-----]  GG   [AUAACAAAACCUUAUA--]  UGGGCUGA    CAAUU  UC   GGUUG  GGG  UGACC     UCGGAG  UACAAAAAACC 
Taxon_06	 GGC  CACA  CGAGGGUUU  UACUG  UCUCUUACUUCCAAUC  A  GU  GAAAU  U   G  ACCU   UCCCGU  GAAGAG  GCGGGA   AUGACUA  AAUAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AAUUA  A   CUGAUUCA  [CAAAAAACAACACACAAA]   CC  [UUAACCUUCAG]  GG   [ACAACAAAACUUUUGAU-]  UGAAUCAG    CAAUU  UC   GGUUG  GGG  UGACC     UCGGAG  AACAAAACAAC 
Taxon_07	 GGC  UCCA  CGAGGGUUU  AGCUG  UCUCUUACUUUCAACC  ?  ??  ?????  ?   ?  ????   ??????  ??????  ??????   ???????  ?????????  ?  ?????  ?????????????  ?  ?????  ?   ????????  [??????????????????]   ??  [???????????]  ??   [??????????????????]  ????????    ?????  ??   ?????  ???  ?????     ??????  ??????????? 
Taxon_08	 GGC  CACA  CGAGGGUUU  UACUG  UCUCUUACUUCCAAUC  A  GU  GAAAU  U   G  ACCU   UCCCGU  GAAGAG  GCGGGA   AUAAUCA  AAUAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AAUUA  A   CUGAUUCA  [CAAAAAACAACAUACAAA]   CC  [UAACCCUCAG-]  GG   [ACAACAAAACUUUUGAU-]  UGAAUCAG    CAAUU  UC   GGUUG  GGG  UGACC     UCGGAG  AACAAAACAAC 
Taxon_09	 GGC  UUCA  CGAGGGUUC  GACUG  UCUCUUACUUUUAACC  A  GU  GAAAU  U   G  ACCU   GCCCGU  GAAGAG  GCGGGC   AUAACAU  AACAAGACG  A  GAAGA  CCCUAUGGAGCUU  C  AAUUU  A   CCAGUGCA  [AAUAACAUACAACAAGC-]   CC  [ACA--------]  GG   [CCCUAAAUCACCAAACC-]  UGCACUGA    AGAUU  UC   GGUUG  GGG  CGACC     UCGGAG  CACAACCCAAC 
Taxon_10	 GGC  AUAA  CGAGGGUUC  AACUG  UCUCUUUUUCUUAAUC  A  AU  GAAAU  U   G  ACCU   ACCCGU  GCAGAG  GCGGGU   AUAUUAA  UAUAAGACG  A  GAAGA  CCCUGUGGAGCUU  A  AGAUU  A   AUAACUUA  [AAUAAAACUAGUACAAA-]   CC  [CUAG-------]  GG   [AAUAACAUUAUUAUUAU-]  UAAGUUAU    AUUCU  UU   GGUUG  GGG  UGACC     UCGGAG  AACAAAAAAAC 
Taxon_11	 GGC  AUCA  CGAGGGUUU  AACUG  UCUCUUAUUCCCAAUC  A  GU  GAAAU  U   G  ACCU   UCCCGU  GCAGAG  GCGGGA   AUAUUAA  UACAAGACG  A  GAAGA  CCCUGUGGAGCUU  A  AGAUU  C   AUAGUCUA  [AUUCAAACAAUUCUA---]   CC  [CUACAUACA--]  GG   [AACAAACACAGACCUAC-]  UAGACUAU    AACCU  UU   GGUUG  GGG  UGACC     UCGGAG  CAUAAAAAAAC 
Taxon_13	 GGC  CACA  CGAGGGUUU  UACUG  UCUCUUACUUUUAAUC  A  GU  GAAAU  U   G  ACCU   CCCCGU  GAAGAG  GCGGGG   AUAACAA  AAUAAGACG  A  GAAGA  CCCUAUGGAGCUU  C  AAUUA  A   UCAACCCA  [AAAAUCACAACCUUAAA-]   CC  [ACCAAG-----]  GG   [AUAACAAAAUUUUAUA--]  UGGGCUGA    CAAUU  UC   GGUUG  GGG  UGACC     UCGGAG  CACAAAAAAUC 
Taxon_14	 GGC  UCCA  CGAGGGUUC  AGCUG  UCUCUUACUUUCAACC  A  GU  GAAAU  U   G  ACCU   GUCCGU  GAAGAG  GCGGAC   AUAACCU  AACAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AGUCU  A   UCAAUGCA  [AACAACAUUCAAUAAA--]   CC  [AACA-------]  GG   [UCAUAAAUUACCAAACC-]  UGCAUCGA    AGACU  UC   GGUUG  GGG  CGACC     UCGGAG  CAUAGACUAAC 
Taxon_15	 GGC  UCCA  CGAGGGUUC  GACUG  UCUCUUACUUUUAACC  A  GU  GAAAU  U   G  ACCU   GCCCGU  GAAGAG  GCGGGC   AUAACAU  AACAAGACG  A  GAAGA  CCCUAUGGAGCUU  C  AAUCU  A   CCAGUGCA  [AAUAACAUAUAACAAG--]   CC  [CACA-------]  GG   [CCCUAAUUCACCAAACC-]  UGCACUGA    AGAUU  UC   GGUUG  GGG  CGACC     UCGGAG  UAUAACCCAAC 
Taxon_16	 GGC  UCCA  CGAGGGUUU  AGCUG  UCUCUUACUUUCAACC  A  GU  GAAAU  U   G  ACCU   ACCCGU  GAAGAG  GCGGGC   AUAACAU  AACAAGACG  A  GAAGA  CCCUAUGGAGCUU  U  AAUUC  A   UUAAUGCA  [AACAAUACUUAACAAA--]   CC  [UACA-------]  GG   [UCCUAAACUAUUAAACC-]  UGCAUUAA    AAAUU  UC   GGUUG  GGG  CGACC     UCGGAG  CACAACCCAAC 
Taxon_18	 GGC  AACA  CGAGGGUUC  AGCUG  UCUCUUACUUUUAACC  A  GU  GAAAU  U   G  ACCU   AUCCGU  GAAGAG  GCGGAC   AUGAAAC  AAUAAGACG  A  GAAGA  CCCCAUGGAGCUU  C  AAUUU  A   CUAAUGUA  [GCUAAGAAUCGUAUAAA-]   UC  [CUCG-------]  GA   [CUCUAAAACUUCUAUGCC]  UACAUUAA    AAAUU  UU   GGUUG  GGG  CGGCC     UCGGAG  CACAAACAAAC 
Taxon_19	 GGC  UAAA  CGAAAAUCC  AACUG  UCUCUUACUCUCAAUC  A  GU  GAAAU  U   G  CCCU   CCCCGU  GCAGAG  ACGGGG   AUAAGAA  CAUAAGACG  A  GAAGA  CCCUGUGGAGCUU  U  AAUUA  A   AAGUAACU  [UCUUCGAACAUUCAA---]   CU  [UAAG-------]  GG   [UGUAGCAUCUAAAAAUUU]  UACUCAAC    UAGUU  UC   GGUUG  GGG  UGACC     UCGGAG  AACAGUUAAAC 
Taxon_20	 GGC  UAGA  CGAAAAUCC  AACUG  UCUCUUACUCCCAAUC  A  GU  GAAAU  U   G  CCCU   CCCCGU  GCAGAG  ACGGGG   AUAACAC  CAUAAGACG  A  GAAGA  CCCUGUGGAGCUU  U  AAUCA  U   AGAUUUAU  [UCUUUUUCAUACAGAC--]   CC  [AAA--------]  AG   [CUCAACACCUUAAGAAUU]  UUUUCAAC    UGAUU  UU   GGUUG  GGG  UGACC     UCGGAG  UACAACAAAAC 


[               81'       I(34)  82       I(35)       86       I(35.5)        I(36)  86'        I(37)          82'  I(38)           88     I(39)    88'                             74'                        89                            89'                           90                91                 91'        ]
[                      t                                                    t                                                                                    t   t                        -              -                              **                                                                             ]
Cow		     CUCCGA    G  [C-]   GA  [UUUUAAAGACUA-]  GAC  [CCA----------]  C  [AA]  GUC  [AAAUCACUCUAUCGC--]  UC   [---] AUUGAUC   CAA  [AAAC---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCAAGA  GUCCAUA  UCGACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUGAUGGUG  CAAC  CGCUAUCAAAGG   U 
Taxon_01	 CUCCGA    G  [C-]   AG  [UACAUGCUAA---]  GAC  [UUCA---------]  C  [CA]  GUC  [AAAGCGAACUACUAUA-]  CU   [CA-] AUUGAUC   CAA  [UAAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCUAGA  GUCCAUA  UCAACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCGAUGGUG  CAGC  CGCUAUUAAAGG   U 
Taxon_02	 ??????    ?  [??]   ??  [?????????????]  ???  [?????????????]  ?  [??]  ???  [?????????????????]  ??   [???] ???????   ???  [???????]  ???   ?????  ?   ?  ????  ??????????????  ???????   ?????????????????  ???????  ?CGACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCAAUGGUG  CAAC  CGCUAUUAAUGG   U 
Taxon_03	 CUCCGA    A  [C-]   AA  [CACAUGCCAA---]  GAC  [UUCA---------]  C  [CA]  GUC  [AAAGCGAGCUACCACA-]  UU   [UA-] AUUGAUC   CAA  [UGAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCUAGA  GUCCAUA  UCAACAGU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCGAUGGUG  CAGC  CGCUAUCAAAGG   U 
Taxon_04	 CUCCGA    G  [U-]   GA  [UUAAAACUUA---]  GGC  [CCA----------]  C  [UA]  GCC  [AAAGUACAAUAUCAC--]  UU   [---] AUUGAUC   CAA  [UCCU---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCUAGA  GUCCAUA  UCGACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUAAUGGUG  CAGC  UGCUAUUAAGGG   U 
Taxon_06	 CUCCGA    G  [U-]   GA  [UUUAAAUCCA---]  GAC  [UAA----------]  C  [CA]  GUC  [AAAAUAUAUAAUCAC--]  UU   [---] AUUGAUC   CAA  [ACCA---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCCAGA  GUCCAUA  UCGACAAU-UAGGGUUUACG   ACCUCGAUGU  UGGAUCAAGAC  AU   CCUAAUGGUG  CAAC  CGCUAUUAAGGG   U 
Taxon_07	 ??????    ?  [??]   ??  [?????????????]  ??C  [CUCA---------]  C  [CA]  GUC  [AAAGCGAAUUAUUACA-]  UC   [CA-] AUUGAUC   CAA  [UUAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCCAGA  GUCCAUA  UCAACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCGAUGGUG  CAGC  CGCUAUUAAAGG   U 
Taxon_08	 CUCCGA    G  [U-]   GA  [UUUAAAUCUA---]  GAC  [UAA----------]  C  [CA]  GUC  [AAAAUACAUAAUCAC--]  UU   [---] AUUGAUC   CAA  [ACCU---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCCAGA  GUCCAUA  UCGACAAU-UAGGGUUUACG   ACCUCGAUGU  UGGAUCAAGAC  AU   CCUAAUGGUG  CAAC  CGCUAUUAAGGG   U 
Taxon_09	 CUCCGA    G  [AA]   AC  [ACAUGUUAA----]  GAC  [CUCA---------]  C  [AA]  GUC  [AAAACGAACUUCCACAC]  AC   [A--] AUUGAUC   CAA  [CAAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUGUUCUAGA  GUCCAUA  UCAACAAC--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUAAUGGUG  CAGC  CGCUAUUAAAGG   U 
Taxon_10	 CUCCGA    A  [UG]   AC  [AUAACCUA-----]  GAU  [UAA----------]  C  [UA]  AUC  [CAAGUGCACAAAAGCCA]  GU   [A--] AUUGACC   CAA  [AUA----]  UUG   AUCAA  C   G  GAAC  AAGUUACCCCAGGG  AUAACAG   CGCAAUCCUAUUUAAGA  GCCCAUA  UCGAAAAUCUAGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUAAUGGUG  CAAC  CGCUAUUAAAGG   U 
Taxon_11	 CUCCGA    A  [UG]   AC  [UAAGCCAA-----]  GAU  [UCA----------]  U  [UA]  AUC  [UAAGCGUAACACUACCA]  GU   [A--] AUUGACC   CAU  [AUU----]  UUG   AUCAA  C   A  GAAC  AAGUUACCCCAGGG  AUAACAG   CGCAAUCCUAUUUAAGA  GCCCAUA  UCGACAAU-UAGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCAAAUGGUG  CAGC  CGCUAUUAAUGG   U 
Taxon_13	 CUCCGA    G  [U-]   GA  [UUAAAACUUA---]  GGC  [UCA----------]  C  [UA]  GCC  [AAAGUGUAAUAUCAC--]  UU   [---] AUUGAUC   CAA  [UCUC---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCUAGA  GUCCAUA  UCGACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUAAUGGUG  CAGC  CACUAUUAAGGG   U 
Taxon_14	 CUCCGA    G  [CA]   GU  [AUAUGCUAA----]  GAC  [CACA---------]  C  [CA]  GUC  [AAAACGAAACUCCAUGU]  GC   [A--] AUUGACC   CAA  [UAAC---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCUAGA  GUCCAUA  UCAACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCGAUGGUG  CAGC  CGCUAUCAAAGG   U 
Taxon_15	 CUCCGA    G  [AA]   AC  [ACAUGUUAA----]  GAC  [UUCA---------]  C  [AA]  GUC  [AAAACAAACUUCCACAC]  AC   [A--] AUUGAUC   CAA  [UAAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUGUUCUAGA  GUCCAUA  UCAACGAC--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCAAUGGUG  CAGC  CGCUAUUAAAGG   U 
Taxon_16	 CUCCGA    G  [C-]   AA  [UACAUGCUAA---]  GAC  [CUCA---------]  C  [CA]  GUC  [AAAGCGAAUUACUACA-]  UC   [CA-] AUUGAUC   CAA  [UGAC---]  UUG   ACCAA  C   G  GAAC  AAGUUACCCUAGGG  AUAACAG   CGCAAUCCUAUUCCAGA  GUCCAUA  UCAACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCCGAUGGUG  CAGC  CGCUAUUAAAGG   U 
Taxon_18	 CUCCGA    G  [--]   UG  [AUCCACGCCAA--]  GGC  [CUCA---------]  C  [AA]  GCC  [AAAGCGAACUAAUAUU-]  CA   [CA-] AUUGACC   CAA  [UAAU---]  UUG   AUCAA  C   G  GAAC  AAGUUACCCUGGGG  AUAACAG   CGCAAUUCUAUUCUAGA  GUCCAUA  UCAACAAU--AGAGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCUAAUGGUG  CAGC  AGCUAUCAAGGG   U 
Taxon_19	 CUCCGA    A  [--]   UG  [AACAGUAAA----]  GAC  [CUA----------]  C  [AA]  GUC  [UAAACGCAAUACUGC--]  CA   [GUA] AUAGACC   CAU  [AUUA---]  UUG   AUCAA  A   G  GACC  AAGUUACCCCAGGG  AUAACAG   CGCAAUCCCAUUCUAGA  GUUCAUA  UCGACAAU--GGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCAAAUGGUG  CAGC  AGCUAUUAAUGG   U 
Taxon_20	 CUCUGA    A  [--]   UG  [CAUAGUAAU----]  AAC  [UUA----------]  C  [AA]  GUU  [UAAACGCAAAACUGC--]  CA   [GUA] AUAGACC   CAA  [AUUA---]  UUG   AUCAA  A   G  GACC  AAGUUACCCCAGGG  AUAACAG   CGCAAUCCUAUUCAAGA  GUUCAUA  UCGACAAU--AGGGUUUACG   ACCUCGAUGU  UGGAUCAGGAC  AU   CCAAAUGGUG  CAGC  CGCUAUUAAUGG   U 


[               92             92'                90'                       93             93'                 73'      I(40)       95                           95'             96        I(41)        96'      I(42)   97   I(43)   97.1    I(44)     97.1' I(45)  97               I(46)                  99      I(47)     99'  ]
[                                                                 t         ----  --                     t                                     *   *                            *                                                                         *                                                                         ]
Cow		      UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [ACGUA-]   UUUCUC  CCAGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCAACUU  [UAAAUC]  AAGCGCCUU   [AAGA-]  CA  [ACCAA-]  UGA  [UAACAUC-]  UC-A  [AC-]  UG  [ACAACACAAAACCCU---------------]   GCCCU  [AGAAC--]  AGGGC   
Taxon_01	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUACU  [UCAAA-]   UUCCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCUACUU  [CACA--]  AAGCGCCUU   [CCCC-]  CG  [UAAA--]  UGA  [UAUCAUC-]  UC-A  [AC-]  UU  [AGUAUUAUACCCACACCC------------]   ACCCA  [AGAAC--]  AGGGU   
Taxon_02	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [UAAUA-]   UUUCUC  CCAGU-ACG-AAAGGAAAA  GAAAAA   U   AAGG-CCCACUU  [CAUAA-]  AAGCGCCUU   [CAAAC]  CA  [AUAGA-]  UGA  [UAUAAUC-]  UC-A  [AUC]  UA  [AUCAAUUUAUACACAAUUUU----------]   ACCCU  [AAACC--]  AGGGU   
Taxon_03	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [CCGUG-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   C   GAGG-CCUACUU  [CACA--]  AAGCGCCUC   [CCCC-]  CG  [UAAA--]  UGA  [UACUAUC-]  UC-A  [AU-]  UU  [AAUAUAGCGCCCACAUCU------------]   ACUCA  [AGAAU--]  AGGGU   
Taxon_04	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [ACGCA-]   UUUCUC  CCAGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCAACUU  [CAAAC-]  AAGCGCCUU   [CAAAC]  AA  [UUAA--]  UGA  [CCUAGUC-]  UC-A  [AC-]  UU  [AAUAAUUAAGCGCAAACAAACCU-------]   GCCCA  [AGACC--]  AGGGC   
Taxon_06	  UCGUU  UGUUC  AACGA   UUAAA  GUCUUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [CUAUA-]   CUUUUC  CCAGU-ACG-AAAGGACAA  GAAAAG   U   AGGG-CCCACUU  [UACAAG]  AAGCGCCCU   [CAAAC]  UA  [AUAGA-]  UGA  [CAUAAUC-]  UA-A  [AUC]  UA  [ACUAAUUUAUAACUUCUACC----------]   GCCCU  [AGAAC--]  AGGGC   
Taxon_07	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUGUU  [CUAAA-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   GGGG-CCUACUU  [CACAAA]  GCGCCUCCC   [CCAA-]  UA  [AA----]  UGA  [UAUUAUC-]  UC-A  [AUU]  UA  [ACACCACACCUACACCCACUCAAGAACAGA]   GUUUG  [UUAAG--]  AUGGC   
Taxon_08	  UCGUU  UGUUC  AACGA   UUAAA  GUCUUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [CUACA-]   CUUUUC  CCAGU-ACG-AAAGGACAA  GAAAAG   U   AGGG-CCCACUU  [UAUAAG]  AAGCGCCCU   [CAAAC]  UA  [AUAGA-]  UGA  [CAUAAUC-]  UA-A  [AUC]  UA  [ACUAAUUUAUUAACCCCACC----------]   GCCCU  [AGAAC--]  AGGGC   
Taxon_09	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GCAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [UCACA-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   GGGG-CCUACUU  [CACAU-]  AAGCGCCUU   [UCCCA]  AA  [CAAA--]  UGA  [UAUCAUC-]  UC-A  [AU-]  UU  [AACACCACACCAACACCC------------]   ACCCA  [AGAAA--]  AGGGC   
Taxon_10	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GAAA  UCCAGGUC   GGUU  U  CUAUCUAUA  [UAUUAA]   UUUCUC  CCAGU-ACG-AAAGGACCA  GAGAAA   U   AGGG-CCAACAU  [UAUCU-]  AUGCGCCCU   [CAUAA]  AA  [UUAA--]  UGA  [AAUAUA--]  UCUA  [AA-]  UU  [AAACCAUUUAAACUUUAUCC----------]   ACUCU  [AGAUA--]  AGAGC   
Taxon_11	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GAAA  UCCAGGUC   GGUU  U  CUAUCUGUA  [CAUUAA]   UUCCUC  CCAGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCUACAC  [UACACA]  GUGAGCCUU   [AGAAG]  CA  [AGAUA-]  UGA  [AUAUA---]  UCUA  [AA-]  UA  [UCCUAAUUCAAUCACUUCCC----------]   ACUCU  [AGAAA--]  AGAGA   
Taxon_13	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [ACGCA-]   UUUCUC  CUAGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCAACUU  [CAAAC-]  AAGCGCCUU   [CAAAU]  AA  [UUAA--]  UGA  [CCUAGUC-]  UC-A  [AC-]  UU  [AAUAACCAAGCGCAAACAAGUAU-------]   GCCCA  [AGACC--]  AGGGC   
Taxon_14	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUGUU  [CUAUA-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   AGGG-CCCACUU  [CGCA--]  AAGCGCCCU   [CCCUC]  CU  [UGGA--]  UGA  [UAUUAUC-]  UC-A  [AUC]  CA  [CAACAUGCCCAAACCC--------------]   GCUCA  [AGAAC--]  AGAGC   
Taxon_15	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GCAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [UCACA-]   UUUCUC  CCUGU-ACG-AAAGAACAA  GAGAAA   U   GGGG-CCUACUU  [CACA--]  AAGCGCCUU   [UCCCA]  AA  [CAAA--]  UGA  [UAUCAUC-]  UC-A  [AU-]  UU  [AACACUACACCAACACCC------------]   ACCCA  [AGAAA--]  AGGGU   
Taxon_16	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUGUU  [CUAAA-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   GAGG-CCUACUU  [CACA--]  AAGCGCCUU   [CCCCA]  AU  [AAA---]  UGA  [UAUUAUC-]  UC-A  [AU-]  UU  [AGCGCCAUGCCAACACCC------------]   ACUCA  [AGAAC--]  AGAGU   
Taxon_18	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GCAA  UCCAGGUC   GGUU  U  CUAUCUAUU  [CCACA-]   UUUCUC  CCUGU-ACG-AAAGGACAA  GAGAAA   U   AAGG-CCCACUU  [CACA--]  AAGCGCCUU   [CACCA]  UA  [UAAA--]  UGA  [CUUAGUC-]  UU-A  [AUU]  UA  [CCAAAAUAUUACACACCCU-----------]   ACCCG  [AGAAC--]  AGGGU   
Taxon_19	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GCAA  UCCAGGUC   GGUU  U  CUAUCUAUG  [AGUUA-]   UUUCUC  CCAGU-ACG-AAAGGACCA  GAGAAA   U   CAGG-CCAAUCU  [CACAA-]  AGAAGCCUU   [CUAUC]  UA  [ACAAA-]  UGA  [UAUCAUC-]  UU-A  [AUU]  UG  [UUCACACCACUCUCUACA------------]   AUCCU  [AGACA--]  AGGAG   
Taxon_20	  UCGUU  UGUUC  AACGA   UUAAA  GUCCUACGUGAUCUGA  GUU  C  A   GACCGGA  GUAA  UCCAGGUC   GGUU  U  CUAUCUAUG  [GGUAA-]   UUUCUC  CUAGU-ACGGAAAGGACCA  GAGAAA   U   CAGG-CCAAUCU  [UAAAA-]  AGAAGCCUC   [CAACU]  UA  [ACAAA-]  UGA  [UUUCAUC-]  UC-A  [AUU]  UG  [CCACGUUACCCUUACUA-------------]   AUCCU  [AGACC--]  AGGAA   

	[B = 
A]
	[D = C]
	[K = G]
	[H = T]
[                     	ambiguous region ]
[                     	         111111111122222222223333333333344444444  ]
[                     	1234567890123456789012345678901234567891012345678  ]
Cow                   	8153A8C6G9370420581662120029148805F0641025412E13
Tomo                  	3C733A6426C9980G231020612212295A16A09E32245C2879
Rhinoceros_unicornis  	82535183J106J02354155070782F0594550033254???????
Gorilla_gorilla       	3933396210A9C8072313205112132A1E?????????95C257E
Aalaenoptera          	944395E57A68F5024715A641C3382TC933E0061A0034491F
Equus_caballus        	8153743E8622T42F55155520614C2EA5951045153CE34A48
Pan_paniscus          	27634A7001E9C80J23104061821427FF168080342?????3C
Equus_asinus          	8153E2289612T42T55155820512E2FT6951051153E934C47
Pongo_pygmaeus_a      	396283695794620422102051T2102L0J7190CA3327261131
Cidelphis_virginiana  	5E56J01CT7JF5C0E3A027701E42T11G1444027282672524J
Macropus_robustus     	7F010T27F3814A0C09019131F51J13J323C0GC191A60575G
Aalaenoptera_musculus 	055326A16473E10157158641A3372JE733E0161A0135495T
Tylobates             	3A146C5A32FA770A261030514916261G81507802121A3306
Pongo_pygmaeus        	2962824948T5890622132051J2112G2T1760A93628571170
Pan_troglodytes       	2863FA7001E9A30L231020619212283E1680F83423CE283A
Papio                 	16251790ECG017152213C06232052C4C6270EF412F890432
Echidna               	4350TF0CC54C363911240341G61A1072A520J2570TAF0025
Platypus              	6050CE3CA25E230860261411L70G1260A030T45C0J080664

;

end;



charset 16S=825-2008 2018-2056;


[Note:  Lutzoni et al discuss a problem with INAASE, and we agree with them.  The problem is that some step matrices call for an extreme number of changes in order to move 
from one sequence to another.  Some of the step matrices call for up to 30 or more steps. Is it justified to put such a heavy weight on a region that is fast evolving
and ambiguously aligned, that could have come about from insertions and deletions of whole strings of nucleotides?  We think not.  We can say that 30 is too high.  But what 
about 29? 20? 15? 10? 3?  The cutoff is arbitrary.  So Kjer simply asked Gillespie to pick an arbitrary maximum for the step matrices produced by INAASE.  Joe said "8".]


BEGIN ASSUMPTIONS;

	USERTYPE Region#1 STEPMATRIX = 10
	[0 = AA]
	[1 = AAAU]
	[2 = AAC]
	[3 = AAU]
	[4 = ACAA]
	[5 = AU]
	[6 = AUAA]
	[7 = CAA]
	[8 = CAU]
	[9 = UAA]

	          0     1     2     3     4     5     6     7     8     9 
	  [0]      .  1.00  1.00  1.00  1.00  1.00  1.00  1.00  2.00  1.00
	  [1]   1.00     .  2.00  1.00  2.00  1.00  2.00  2.00  2.00  2.00
	  [2]   1.00  2.00     .  1.00  2.00  2.00  2.00  2.00  2.00  2.00
	  [3]   1.00  1.00  1.00     .  2.00  1.00  2.00  2.00  1.00  2.00
	  [4]   1.00  2.00  2.00  2.00     .  2.00  1.00  1.00  2.00  2.00
	  [5]   1.00  1.00  2.00  1.00  2.00     .  1.00  2.00  1.00  2.00
	  [6]   1.00  2.00  2.00  2.00  1.00  1.00     .  2.00  3.00  1.00
	  [7]   1.00  2.00  2.00  2.00  1.00  2.00  2.00     .  1.00  1.00
	  [8]   2.00  2.00  2.00  1.00  2.00  1.00  3.00  1.00     .  2.00
	  [9]   1.00  2.00  2.00  2.00  2.00  2.00  1.00  1.00  2.00     .
;


	USERTYPE Region#2 STEPMATRIX = 14
	[0 = AACCCA]
	[1 = ACCCCA]
	[2 = ACUCCA]
	[3 = AGACCA]
	[4 = AUCCCA]
	[5 = AUCCCG]
	[6 = AUUCCG]
	[7 = CCC]
	[8 = GCCCC]
	[9 = GCCCCA]
	[A = GCCCCG]
	[C = GUUCCA]
	[E = UACCCA]
	[F = UGCCCG]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F 
	  [0]      .  1.00  2.00  2.00  1.00  2.00  3.00  2.00  3.00  2.00  3.00  3.00  1.00  3.00
	  [1]   1.00     .  1.00  2.00  1.00  2.00  3.00  2.00  2.00  1.00  2.00  3.00  2.00  3.00
	  [2]   2.00  1.00     .  2.00  2.00  3.00  2.00  2.00  3.00  2.00  3.00  2.00  3.00  4.00
	  [3]   2.00  2.00  2.00     .  2.00  3.00  3.00  2.00  3.00  3.00  4.00  3.00  3.00  3.00
	  [4]   1.00  1.00  2.00  2.00     .  1.00  2.00  2.00  3.00  2.00  3.00  2.00  2.00  3.00
	  [5]   2.00  2.00  3.00  3.00  1.00     .  1.00  2.00  3.00  3.00  2.00  3.00  3.00  2.00
	  [6]   3.00  3.00  2.00  3.00  2.00  1.00     .  2.00  4.00  4.00  3.00  2.00  4.00  3.00
	  [7]   2.00  2.00  2.00  2.00  2.00  2.00  2.00     .  1.00  2.00  2.00  2.00  2.00  2.00
	  [8]   3.00  2.00  3.00  3.00  3.00  3.00  4.00  1.00     .  2.00  2.00  3.00  3.00  2.00
	  [9]   2.00  1.00  2.00  3.00  2.00  3.00  4.00  2.00  2.00     .  1.00  2.00  2.00  3.00
	  [A]   3.00  2.00  3.00  4.00  3.00  2.00  3.00  2.00  2.00  1.00     .  3.00  3.00  2.00
	  [C]   3.00  3.00  2.00  3.00  2.00  3.00  2.00  2.00  3.00  2.00  3.00     .  3.00  4.00
	  [E]   1.00  2.00  3.00  3.00  2.00  3.00  4.00  2.00  3.00  2.00  3.00  3.00     .  2.00
	  [F]   3.00  3.00  4.00  3.00  3.00  2.00  3.00  2.00  2.00  3.00  2.00  4.00  2.00     .
;


	USERTYPE Region#3 STEPMATRIX = 8
	[0 = AAAAU]
	[1 = AAAUC]
	[2 = AAGAC]
	[3 = AAUC]
	[4 = AGAAC]
	[5 = AGAAU]
	[6 = AGUC]
	[7 = AGUUC]

	          0     1     2     3     4     5     6     7 
	  [0]      .  2.00  2.00  3.00  2.00  1.00  4.00  3.00
	  [1]   2.00     .  2.00  1.00  2.00  3.00  2.00  2.00
	  [2]   2.00  2.00     .  2.00  2.00  3.00  2.00  3.00
	  [3]   3.00  1.00  2.00     .  2.00  3.00  1.00  2.00
	  [4]   2.00  2.00  2.00  2.00     .  1.00  2.00  2.00
	  [5]   1.00  3.00  3.00  3.00  1.00     .  3.00  2.00
	  [6]   4.00  2.00  2.00  1.00  2.00  3.00     .  1.00
	  [7]   3.00  2.00  3.00  2.00  2.00  2.00  1.00     .
;


	USERTYPE Region#4 STEPMATRIX = 7
	[0 = AAA]
	[1 = CAA]
	[2 = CCA]
	[3 = CUA]
	[4 = UCA]
	[5 = UCC]
	[6 = UUA]

	          0     1     2     3     4     5     6 
	  [0]      .  1.00  2.00  2.00  2.00  3.00  2.00
	  [1]   1.00     .  1.00  1.00  2.00  3.00  2.00
	  [2]   2.00  1.00     .  1.00  1.00  2.00  2.00
	  [3]   2.00  1.00  1.00     .  2.00  3.00  1.00
	  [4]   2.00  2.00  1.00  2.00     .  1.00  1.00
	  [5]   3.00  3.00  2.00  3.00  1.00     .  2.00
	  [6]   2.00  2.00  2.00  1.00  1.00  2.00     .
;


	USERTYPE Region#5 STEPMATRIX = 16
	[0 = AAAACUA]
	[1 = AACAU]
	[2 = ACAAA]
	[3 = ACCAC]
	[4 = ACCAU]
	[5 = ACCCAUAAC]
	[6 = ACCCGU]
	[7 = ACGUCUCUAC]
	[8 = ACUCU]
	[9 = AUAAA]
	[A = AUUAA]
	[C = CUUAACA]
	[E = GCACUCUAC]
	[F = GCCAU]
	[T = UUAAGCA]
	[J = UUAUAAAUU]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J 
	  [0]      .  3.00  2.00  4.00  4.00  6.00  5.00  5.00  5.00  2.00  3.00  5.00  5.00  5.00  4.00  4.00
	  [1]   3.00     .  3.00  2.00  1.00  3.00  3.00  4.00  3.00  3.00  3.00  5.00  5.00  2.00  4.00  3.00
	  [2]   2.00  3.00     .  2.00  2.00  2.00  4.00  3.00  3.00  1.00  2.00  4.00  3.00  3.00  3.00  4.00
	  [3]   4.00  2.00  2.00     .  1.00  1.00  3.00  2.00  3.00  3.00  3.00  5.00  3.00  2.00  5.00  5.00
	  [4]   4.00  1.00  2.00  1.00     .  2.00  2.00  3.00  2.00  3.00  3.00  5.00  4.00  1.00  5.00  4.00
	  [5]   6.00  3.00  2.00  1.00  2.00     .  3.00  5.00  3.00  2.00  3.00  6.00  5.00  3.00  5.00  7.00
	  [6]   5.00  3.00  4.00  3.00  2.00  3.00     .  4.00  2.00  5.00  5.00  3.00  5.00  3.00  6.00  6.00
	  [7]   5.00  4.00  3.00  2.00  3.00  5.00  4.00     .  3.00  4.00  3.00  7.00  3.00  4.00  6.00  8.00
	  [8]   5.00  3.00  3.00  3.00  2.00  3.00  2.00  3.00     .  4.00  3.00  4.00  3.00  3.00  4.00  4.00
	  [9]   2.00  3.00  1.00  3.00  3.00  2.00  5.00  4.00  4.00     .  1.00  3.00  4.00  2.00  2.00  4.00
	  [A]   3.00  3.00  2.00  3.00  3.00  3.00  5.00  3.00  3.00  1.00     .  2.00  4.00  2.00  3.00  4.00
	  [C]   5.00  5.00  4.00  5.00  5.00  6.00  3.00  7.00  4.00  3.00  2.00     .  7.00  5.00  3.00  5.00
	  [E]   5.00  5.00  3.00  3.00  4.00  5.00  5.00  3.00  3.00  4.00  4.00  7.00     .  3.00  6.00  4.00
	  [F]   5.00  2.00  3.00  2.00  1.00  3.00  3.00  4.00  3.00  2.00  2.00  5.00  3.00     .  5.00  5.00
	  [T]   4.00  4.00  3.00  5.00  5.00  5.00  6.00  6.00  4.00  2.00  3.00  3.00  6.00  5.00     .  4.00
	  [J]   4.00  3.00  4.00  5.00  4.00  7.00  6.00  8.00  4.00  4.00  4.00  5.00  4.00  5.00  4.00     .
;


	USERTYPE Region#6 STEPMATRIX = 15
	[0 = AAA]
	[1 = AAUAAC]
	[2 = ACAA]
	[3 = ACAG]
	[4 = AGAA]
	[5 = AGCACU]
	[6 = AGUACU]
	[7 = CCAU]
	[8 = CCC]
	[9 = GAAA]
	[A = GCAA]
	[C = GUAA]
	[E = UAAA]
	[F = UAAC]
	[T = UAUA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T 
	  [0]      .  2.00  1.00  2.00  1.00  3.00  3.00  3.00  3.00  1.00  2.00  2.00  1.00  2.00  2.00
	  [1]   2.00     .  3.00  3.00  3.00  4.00  3.00  4.00  3.00  3.00  4.00  4.00  2.00  1.00  3.00
	  [2]   1.00  3.00     .  1.00  1.00  3.00  3.00  2.00  3.00  2.00  1.00  2.00  2.00  2.00  3.00
	  [3]   2.00  3.00  1.00     .  2.00  4.00  4.00  2.00  3.00  3.00  2.00  3.00  3.00  2.00  3.00
	  [4]   1.00  3.00  1.00  2.00     .  3.00  3.00  3.00  4.00  2.00  2.00  2.00  2.00  3.00  3.00
	  [5]   3.00  4.00  3.00  4.00  3.00     .  1.00  3.00  3.00  4.00  3.00  4.00  4.00  4.00  4.00
	  [6]   3.00  3.00  3.00  4.00  3.00  1.00     .  4.00  3.00  4.00  4.00  3.00  3.00  3.00  3.00
	  [7]   3.00  4.00  2.00  2.00  3.00  3.00  4.00     .  2.00  3.00  2.00  3.00  3.00  3.00  2.00
	  [8]   3.00  3.00  3.00  3.00  4.00  3.00  3.00  2.00     .  4.00  3.00  4.00  4.00  3.00  4.00
	  [9]   1.00  3.00  2.00  3.00  2.00  4.00  4.00  3.00  4.00     .  1.00  1.00  1.00  2.00  2.00
	  [A]   2.00  4.00  1.00  2.00  2.00  3.00  4.00  2.00  3.00  1.00     .  1.00  2.00  3.00  3.00
	  [C]   2.00  4.00  2.00  3.00  2.00  4.00  3.00  3.00  4.00  1.00  1.00     .  2.00  2.00  2.00
	  [E]   1.00  2.00  2.00  3.00  2.00  4.00  3.00  3.00  4.00  1.00  2.00  2.00     .  1.00  1.00
	  [F]   2.00  1.00  2.00  2.00  3.00  4.00  3.00  3.00  3.00  2.00  3.00  2.00  1.00     .  2.00
	  [T]   2.00  3.00  3.00  3.00  3.00  4.00  3.00  2.00  4.00  2.00  3.00  2.00  1.00  2.00     .
;


	USERTYPE Region#7 STEPMATRIX = 13
	[0 = ACA]
	[1 = ACAUU]
	[2 = ACU]
	[3 = AUA]
	[4 = CCAC]
	[5 = CCC]
	[6 = CCCC]
	[7 = CCUC]
	[8 = GC]
	[9 = GCC]
	[A = UA]
	[C = UU]
	[E = UUUA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E 
	  [0]      .  2.00  1.00  1.00  2.00  2.00  3.00  3.00  2.00  2.00  2.00  3.00  3.00
	  [1]   2.00     .  1.00  2.00  3.00  3.00  4.00  3.00  2.00  3.00  2.00  1.00  4.00
	  [2]   1.00  1.00     .  2.00  3.00  2.00  3.00  2.00  2.00  2.00  3.00  2.00  3.00
	  [3]   1.00  2.00  2.00     .  3.00  3.00  4.00  3.00  3.00  3.00  1.00  2.00  2.00
	  [4]   2.00  3.00  3.00  3.00     .  1.00  1.00  1.00  2.00  2.00  3.00  3.00  4.00
	  [5]   2.00  3.00  2.00  3.00  1.00     .  1.00  1.00  2.00  1.00  3.00  3.00  4.00
	  [6]   3.00  4.00  3.00  4.00  1.00  1.00     .  1.00  2.00  2.00  3.00  3.00  4.00
	  [7]   3.00  3.00  2.00  3.00  1.00  1.00  1.00     .  2.00  2.00  2.00  2.00  3.00
	  [8]   2.00  2.00  2.00  3.00  2.00  2.00  2.00  2.00     .  1.00  2.00  2.00  3.00
	  [9]   2.00  3.00  2.00  3.00  2.00  1.00  2.00  2.00  1.00     .  3.00  3.00  4.00
	  [A]   2.00  2.00  3.00  1.00  3.00  3.00  3.00  2.00  2.00  3.00     .  1.00  1.00
	  [C]   3.00  1.00  2.00  2.00  3.00  3.00  3.00  2.00  2.00  3.00  1.00     .  1.00
	  [E]   3.00  4.00  3.00  2.00  4.00  4.00  4.00  3.00  3.00  4.00  1.00  1.00     .
;


	USERTYPE Region#8 STEPMATRIX = 13
	[0 = AAC]
	[1 = AACA]
	[2 = AAU]
	[3 = ACCU]
	[4 = AGC]
	[5 = AGCA]
	[6 = AGUA]
	[7 = CAAA]
	[8 = CCCUC]
	[9 = GAU]
	[A = GCC]
	[C = UAA]
	[E = UCUC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E 
	  [0]      .  1.00  1.00  2.00  1.00  2.00  3.00  2.00  3.00  2.00  2.00  2.00  3.00
	  [1]   1.00     .  2.00  2.00  2.00  1.00  2.00  2.00  4.00  3.00  3.00  2.00  4.00
	  [2]   1.00  2.00     .  2.00  2.00  3.00  2.00  2.00  4.00  1.00  3.00  2.00  3.00
	  [3]   2.00  2.00  2.00     .  2.00  2.00  3.00  4.00  3.00  3.00  2.00  3.00  3.00
	  [4]   1.00  2.00  2.00  2.00     .  1.00  2.00  3.00  3.00  3.00  2.00  3.00  3.00
	  [5]   2.00  1.00  3.00  2.00  1.00     .  1.00  2.00  4.00  3.00  2.00  3.00  4.00
	  [6]   3.00  2.00  2.00  3.00  2.00  1.00     .  3.00  4.00  3.00  3.00  3.00  3.00
	  [7]   2.00  2.00  2.00  4.00  3.00  2.00  3.00     .  4.00  3.00  3.00  2.00  4.00
	  [8]   3.00  4.00  4.00  3.00  3.00  4.00  4.00  4.00     .  4.00  2.00  3.00  2.00
	  [9]   2.00  3.00  1.00  3.00  3.00  3.00  3.00  3.00  4.00     .  2.00  2.00  3.00
	  [A]   2.00  3.00  3.00  2.00  2.00  2.00  3.00  3.00  2.00  2.00     .  3.00  2.00
	  [C]   2.00  2.00  2.00  3.00  3.00  3.00  3.00  2.00  3.00  2.00  3.00     .  3.00
	  [E]   3.00  4.00  3.00  3.00  3.00  4.00  3.00  4.00  2.00  3.00  2.00  3.00     .
;

[16S]

	USERTYPE Region#9 STEPMATRIX = 17
	[0 = ACUCAACUUGACCACUCUGA]
	[1 = ACUCAACUUGACCGCUCUGA]
	[2 = ACUUAACUUGACCGCUCUGA]
	[3 = AUUAACUUGACCACCCUGA]
	[4 = AUUCAACCUGACCCCUCUGA]
	[5 = AUUCAACCUGGCCCCUCUGA]
	[6 = CAGCCCGUGCAUAUCUUGA]
	[7 = CAGCCCGUGUAUAUCUUGA]
	[8 = CUCAAAAUGAACACUUUGA]
	[9 = CUCAGAGUGAACACUUUGA]
	[A = CUGAAAGAUAUUUAUCACAAAAUCAUUUUGA]
	[C = CUGAAAGAUAUUUUACAUAAAUCAUUUUGA]
	[E = CUGACUUACACUCAGAAGAUCUAACAUU]
	[F = GCUAAUCCUGACCAUUUUGA]
	[T = GUCUAAUCUGACCAUUUUGA]
	[J = UACAAAAUGACCACUUUGA]
	[G = UUCAUUAUGAAUAUCUUGA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  1.00  2.00  3.00  3.00  4.00  8.00  8.00  5.00  6.00  8.00  8.00  8.00  6.00  8.00  6.00  8.00
	  [1]   1.00     .  1.00  4.00  3.00  4.00  8.00  8.00  6.00  7.00  8.00  8.00  8.00  7.00  8.00  7.00  8.00
	  [2]   2.00  1.00     .  3.00  4.00  5.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00
	  [3]   3.00  4.00  3.00     .  4.00  5.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  7.00  7.00  7.00  8.00
	  [4]   3.00  3.00  4.00  4.00     .  1.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  7.00  7.00  6.00  8.00
	  [5]   4.00  4.00  5.00  5.00  1.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00
	  [6]   8.00  8.00  8.00  8.00  8.00  8.00     .  1.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [7]   8.00  8.00  8.00  8.00  8.00  8.00  1.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [8]   5.00  6.00  7.00  7.00  7.00  8.00  8.00  8.00     .  2.00  6.00  7.00  8.00  7.00  6.00  3.00  6.00
	  [9]   6.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  2.00     .  7.00  7.00  8.00  7.00  7.00  5.00  7.00
	  [A]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00  7.00     .  4.00  8.00  8.00  8.00  8.00  8.00
	  [C]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  7.00  4.00     .  8.00  8.00  8.00  8.00  8.00
	  [E]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00
	  [F]   6.00  7.00  7.00  7.00  7.00  8.00  8.00  8.00  7.00  7.00  8.00  8.00  8.00     .  5.00  7.00  8.00
	  [T]   8.00  8.00  8.00  7.00  7.00  8.00  8.00  8.00  6.00  7.00  8.00  8.00  8.00  5.00     .  6.00  7.00
	  [J]   6.00  7.00  8.00  7.00  6.00  7.00  8.00  8.00  3.00  5.00  8.00  8.00  8.00  7.00  6.00     .  7.00
	  [G]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00  7.00  8.00  8.00  8.00  8.00  7.00  7.00     .
;

	USERTYPE Region#10 STEPMATRIX = 12
	[0 = AAAA]
	[1 = CAAA]
	[2 = CAAC]
	[3 = CAAU]
	[4 = CAGC]
	[5 = CUUAAC]
	[6 = UAAA]
	[7 = UAAC]
	[8 = UAAU]
	[9 = UAGA]
	[A = UAGC]
	[C = UU]

	          0     1     2     3     4     5     6     7     8     9     A     C 
	  [0]      .  1.00  2.00  2.00  3.00  3.00  1.00  2.00  2.00  2.00  3.00  3.00
	  [1]   1.00     .  1.00  1.00  2.00  2.00  1.00  2.00  2.00  2.00  3.00  3.00
	  [2]   2.00  1.00     .  1.00  1.00  1.00  2.00  1.00  2.00  3.00  2.00  3.00
	  [3]   2.00  1.00  1.00     .  2.00  2.00  2.00  2.00  1.00  3.00  3.00  2.00
	  [4]   3.00  2.00  1.00  2.00     .  2.00  3.00  2.00  3.00  2.00  1.00  3.00
	  [5]   3.00  2.00  1.00  2.00  2.00     .  2.00  1.00  2.00  3.00  2.00  2.00
	  [6]   1.00  1.00  2.00  2.00  3.00  2.00     .  1.00  1.00  1.00  2.00  2.00
	  [7]   2.00  2.00  1.00  2.00  2.00  1.00  1.00     .  1.00  2.00  1.00  2.00
	  [8]   2.00  2.00  2.00  1.00  3.00  2.00  1.00  1.00     .  2.00  2.00  1.00
	  [9]   2.00  2.00  3.00  3.00  2.00  3.00  1.00  2.00  2.00     .  1.00  2.00
	  [A]   3.00  3.00  2.00  3.00  1.00  2.00  2.00  1.00  2.00  1.00     .  2.00
	  [C]   3.00  3.00  3.00  2.00  3.00  2.00  2.00  2.00  1.00  2.00  2.00     .
;


	USERTYPE Region#11 STEPMATRIX = 17
	[0 = AAACAAAUCCUAACCCAACUACCACUAAGCCCACUUAAAC]
	[1 = AAACAAUACCCAACUCAACUACCCUUAGUCACUUAACU]
	[2 = AAACAAUACCUAAUUCAAUUACCCUUAGUCACUUAACU]
	[3 = AAAGAUACCCUCUCGACUAAACAACCAAGAUAGAAUAAAAC]
	[4 = AAAUCAACACAAUCAACCUAUGUAUUUCAACAAACU]
	[5 = AAAUUAAUCUUAAUACACAUAUAAACUCUAAUAAACU]
	[6 = ACACCCUCCCCACCUCUACUACCACAAAUCAAUCAAAU]
	[7 = ACCCCCACCCCCCUUUUACUACCAUAGACCAAUCAAAU]
	[8 = AUCCAACUAUCAAAUCAAAUAUCACAAACACCUAAUCU]
	[9 = CAAACCCAACCCACCCUACUACCAACCAACCCUAACC]
	[A = CAAACCCACCCCACAUUACUACCAAACAACUUUAAUC]
	[C = CAAACCCACUCCACCUUACUACCAGACAACCUUAGCC]
	[E = CAAACCCCCUCCACCCUACUACCAAACAACCUUAACC]
	[F = CAAAUCACCCCAACCCUACUAUCAAGUAACAUCAACC]
	[T = CGAACCCAAUCCACCCUACUACCAAAUCAACCUUAACC]
	[J = UAAAAUCAUAUCAAAUUAACUAACUACUUUUUCAAUUU]
	[G = UGAGCCAACACUAGCUCCAAGCACAACCAACACUAAUAUCAAACCCACAUGUAUACC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [1]   8.00     .  3.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [2]   8.00  3.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [3]   8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [4]   8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [5]   8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [6]   8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [7]   8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [8]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [9]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  7.00  7.00  5.00  8.00  5.00  8.00  8.00
	  [A]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00     .  6.00  6.00  8.00  8.00  8.00  8.00
	  [C]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  6.00     .  4.00  8.00  6.00  8.00  8.00
	  [E]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  5.00  6.00  4.00     .  8.00  4.00  8.00  8.00
	  [F]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00
	  [T]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  5.00  8.00  6.00  4.00  8.00     .  8.00  8.00
	  [J]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00
	  [G]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .
;


	USERTYPE Region#12 STEPMATRIX = 14
	[0 = AACCCAUAU]
	[1 = CAACCUGUC]
	[2 = CACCAAACCAUU]
	[3 = CACCAACCUUCU]
	[4 = CACCCAAAC]
	[5 = CACCCAAGC]
	[6 = CACUUAAACCCACU]
	[7 = UAAUCCCAAUUU]
	[8 = UACCAUCCCUUC]
	[9 = UACCCAAAU]
	[A = UACCCGUAC]
	[C = UUAACAUCAACCC]
	[E = UUAACGCUAACCC]
	[F = UUAAUUAUC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F 
	  [0]      .  6.00  5.00  4.00  3.00  4.00  5.00  4.00  5.00  2.00  3.00  7.00  8.00  8.00
	  [1]   6.00     .  5.00  4.00  4.00  4.00  5.00  6.00  4.00  4.00  4.00  6.00  6.00  5.00
	  [2]   5.00  5.00     .  4.00  4.00  4.00  4.00  8.00  5.00  4.00  6.00  8.00  8.00  6.00
	  [3]   4.00  4.00  4.00     .  5.00  5.00  4.00  5.00  5.00  5.00  5.00  8.00  8.00  8.00
	  [4]   3.00  4.00  4.00  5.00     .  1.00  4.00  6.00  5.00  2.00  3.00  5.00  6.00  7.00
	  [5]   4.00  4.00  4.00  5.00  1.00     .  4.00  6.00  5.00  3.00  4.00  5.00  6.00  7.00
	  [6]   5.00  5.00  4.00  4.00  4.00  4.00     .  8.00  7.00  4.00  6.00  5.00  6.00  8.00
	  [7]   4.00  6.00  8.00  5.00  6.00  6.00  8.00     .  7.00  4.00  5.00  7.00  7.00  7.00
	  [8]   5.00  4.00  5.00  5.00  5.00  5.00  7.00  7.00     .  5.00  3.00  6.00  8.00  6.00
	  [9]   2.00  4.00  4.00  5.00  2.00  3.00  4.00  4.00  5.00     .  3.00  6.00  7.00  7.00
	  [A]   3.00  4.00  6.00  5.00  3.00  4.00  6.00  5.00  3.00  3.00     .  6.00  6.00  7.00
	  [C]   7.00  6.00  8.00  8.00  5.00  5.00  5.00  7.00  6.00  6.00  6.00     .  3.00  5.00
	  [E]   8.00  6.00  8.00  8.00  6.00  6.00  6.00  7.00  8.00  7.00  6.00  3.00     .  4.00
	  [F]   8.00  5.00  6.00  8.00  7.00  7.00  8.00  7.00  6.00  7.00  7.00  5.00  4.00     .
;


	USERTYPE Region#13 STEPMATRIX = 16
	[0 = CUAAGUAC]
	[1 = CUUAACCU]
	[2 = GAAAUU]
	[3 = GAAUAACC]
	[4 = GACUGACUCCA]
	[5 = GAUAUAAUA]
	[6 = UACAAUCC]
	[7 = UACCAACCU]
	[8 = UAUAAUCC]
	[9 = UGAAACCU]
	[A = UGUAAACC]
	[C = UGUAAAUC]
	[E = UUAAACAUCAGU]
	[F = UUAAAUAUCAGU]
	[T = UUUAACUU]
	[J = UUUAAUC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J 
	  [0]      .  3.00  5.00  4.00  5.00  7.00  5.00  5.00  5.00  5.00  3.00  6.00  5.00  4.00  4.00  4.00
	  [1]   3.00     .  4.00  5.00  7.00  6.00  5.00  4.00  4.00  3.00  4.00  5.00  4.00  5.00  2.00  4.00
	  [2]   5.00  4.00     .  3.00  5.00  2.00  5.00  4.00  5.00  4.00  4.00  3.00  4.00  4.00  3.00  4.00
	  [3]   4.00  5.00  3.00     .  4.00  3.00  4.00  5.00  4.00  4.00  4.00  3.00  6.00  6.00  5.00  4.00
	  [4]   5.00  7.00  5.00  4.00     .  5.00  6.00  5.00  7.00  4.00  6.00  7.00  7.00  8.00  7.00  5.00
	  [5]   7.00  6.00  2.00  3.00  5.00     .  6.00  6.00  5.00  7.00  5.00  4.00  6.00  5.00  5.00  3.00
	  [6]   5.00  5.00  5.00  4.00  6.00  6.00     .  3.00  1.00  4.00  3.00  4.00  6.00  5.00  5.00  3.00
	  [7]   5.00  4.00  4.00  5.00  5.00  6.00  3.00     .  4.00  3.00  5.00  6.00  6.00  7.00  4.00  6.00
	  [8]   5.00  4.00  5.00  4.00  7.00  5.00  1.00  4.00     .  4.00  2.00  3.00  6.00  5.00  4.00  2.00
	  [9]   5.00  3.00  4.00  4.00  4.00  7.00  4.00  3.00  4.00     .  3.00  4.00  3.00  4.00  3.00  5.00
	  [A]   3.00  4.00  4.00  4.00  6.00  5.00  3.00  5.00  2.00  3.00     .  1.00  5.00  5.00  4.00  3.00
	  [C]   6.00  5.00  3.00  3.00  7.00  4.00  4.00  6.00  3.00  4.00  1.00     .  5.00  5.00  3.00  2.00
	  [E]   5.00  4.00  4.00  6.00  7.00  6.00  6.00  6.00  6.00  3.00  5.00  5.00     .  1.00  3.00  4.00
	  [F]   4.00  5.00  4.00  6.00  8.00  5.00  5.00  7.00  5.00  4.00  5.00  5.00  1.00     .  4.00  3.00
	  [T]   4.00  2.00  3.00  5.00  7.00  5.00  5.00  4.00  4.00  3.00  4.00  3.00  3.00  4.00     .  2.00
	  [J]   4.00  4.00  4.00  4.00  5.00  3.00  3.00  6.00  2.00  5.00  3.00  2.00  4.00  3.00  2.00     .
;


	USERTYPE Region#14 STEPMATRIX = 12
	[0 = AAAA]
	[1 = AAAU]
	[2 = ACAC]
	[3 = ACAU]
	[4 = AGAA]
	[5 = AGAU]
	[6 = AUAA]
	[7 = AUAC]
	[8 = AUAU]
	[9 = AUGC]
	[A = CGCA]
	[C = UUUAU]

	          0     1     2     3     4     5     6     7     8     9     A     C 
	  [0]      .  1.00  2.00  2.00  1.00  2.00  1.00  2.00  2.00  3.00  3.00  4.00
	  [1]   1.00     .  2.00  1.00  2.00  1.00  2.00  2.00  1.00  2.00  2.00  3.00
	  [2]   2.00  2.00     .  1.00  2.00  2.00  2.00  1.00  2.00  2.00  3.00  4.00
	  [3]   2.00  1.00  1.00     .  2.00  1.00  2.00  2.00  1.00  3.00  3.00  3.00
	  [4]   1.00  2.00  2.00  2.00     .  1.00  1.00  2.00  2.00  3.00  2.00  4.00
	  [5]   2.00  1.00  2.00  1.00  1.00     .  2.00  2.00  1.00  3.00  3.00  3.00
	  [6]   1.00  2.00  2.00  2.00  1.00  2.00     .  1.00  1.00  2.00  3.00  3.00
	  [7]   2.00  2.00  1.00  2.00  2.00  2.00  1.00     .  1.00  1.00  4.00  3.00
	  [8]   2.00  1.00  2.00  1.00  2.00  1.00  1.00  1.00     .  2.00  2.00  2.00
	  [9]   3.00  2.00  2.00  3.00  3.00  3.00  2.00  1.00  2.00     .  4.00  4.00
	  [A]   3.00  2.00  3.00  3.00  2.00  3.00  3.00  4.00  2.00  4.00     .  4.00
	  [C]   4.00  3.00  4.00  3.00  4.00  3.00  3.00  3.00  2.00  4.00  4.00     .
;


	USERTYPE Region#15 STEPMATRIX = 4
	[0 = AAA]
	[1 = AAAG]
	[2 = AAC]
	[3 = AACA]

	          0     1     2     3 
	  [0]      .  1.00  1.00  1.00
	  [1]   1.00     .  2.00  2.00
	  [2]   1.00  2.00     .  1.00
	  [3]   1.00  2.00  1.00     .
;


	USERTYPE Region#16 STEPMATRIX = 18
	[0 = AAAAAACUAAAA]
	[1 = AAAACCCAAAA]
	[2 = AAAACCUAAAA]
	[3 = AAUUUUAAAA]
	[4 = ACACAACCAA]
	[5 = ACCACCCAA]
	[6 = ACGAAACCAA]
	[7 = AUAUAACCAA]
	[8 = AUUAGCUUAAA]
	[9 = AUUUCCCCAA]
	[A = CACGACCAA]
	[C = CUAAUUAUAA]
	[E = UAAAUUAUA]
	[F = UGCAUUAAAA]
	[T = UGUAUUAAAA]
	[J = UUACACCCAA]
	[G = UUAUAACCAA]
	[L = UUAUACCCAA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G     L 
	  [0]      .  3.00  2.00  4.00  4.00  5.00  4.00  4.00  5.00  7.00  5.00  5.00  4.00  5.00  5.00  6.00  5.00  6.00
	  [1]   3.00     .  1.00  5.00  6.00  3.00  6.00  6.00  5.00  5.00  5.00  6.00  5.00  6.00  6.00  6.00  7.00  6.00
	  [2]   2.00  1.00     .  4.00  6.00  4.00  7.00  7.00  4.00  6.00  6.00  5.00  4.00  5.00  5.00  7.00  8.00  7.00
	  [3]   4.00  5.00  4.00     .  7.00  7.00  7.00  6.00  5.00  5.00  7.00  5.00  5.00  4.00  3.00  4.00  4.00  4.00
	  [4]   4.00  6.00  6.00  7.00     .  2.00  2.00  2.00  7.00  5.00  2.00  6.00  7.00  8.00  8.00  3.00  3.00  4.00
	  [5]   5.00  3.00  4.00  7.00  2.00     .  3.00  4.00  5.00  4.00  4.00  7.00  7.00  6.00  7.00  3.00  5.00  4.00
	  [6]   4.00  6.00  7.00  7.00  2.00  3.00     .  3.00  7.00  5.00  4.00  5.00  7.00  7.00  7.00  5.00  4.00  5.00
	  [7]   4.00  6.00  7.00  6.00  2.00  4.00  3.00     .  6.00  3.00  4.00  5.00  6.00  7.00  6.00  3.00  1.00  2.00
	  [8]   5.00  5.00  4.00  5.00  7.00  5.00  7.00  6.00     .  5.00  7.00  6.00  4.00  6.00  5.00  6.00  6.00  6.00
	  [9]   7.00  5.00  6.00  5.00  5.00  4.00  5.00  3.00  5.00     .  6.00  7.00  8.00  7.00  7.00  4.00  4.00  3.00
	  [A]   5.00  5.00  6.00  7.00  2.00  4.00  4.00  4.00  7.00  6.00     .  6.00  4.00  7.00  8.00  4.00  4.00  5.00
	  [C]   5.00  6.00  5.00  5.00  6.00  7.00  5.00  5.00  6.00  7.00  6.00     .  3.00  4.00  4.00  3.00  3.00  2.00
	  [E]   4.00  5.00  4.00  5.00  7.00  7.00  7.00  6.00  4.00  8.00  4.00  3.00     .  4.00  4.00  6.00  6.00  6.00
	  [F]   5.00  6.00  5.00  4.00  8.00  6.00  7.00  7.00  6.00  7.00  7.00  4.00  4.00     .  1.00  4.00  4.00  4.00
	  [T]   5.00  6.00  5.00  3.00  8.00  7.00  7.00  6.00  5.00  7.00  8.00  4.00  4.00  1.00     .  4.00  3.00  3.00
	  [J]   6.00  6.00  7.00  4.00  3.00  3.00  5.00  3.00  6.00  4.00  4.00  3.00  6.00  4.00  4.00     .  2.00  1.00
	  [G]   5.00  7.00  8.00  4.00  3.00  5.00  4.00  1.00  6.00  4.00  4.00  3.00  6.00  4.00  3.00  2.00     .  1.00
	  [L]   6.00  6.00  7.00  4.00  4.00  4.00  5.00  2.00  6.00  3.00  5.00  2.00  6.00  4.00  3.00  1.00  1.00     .
;


	USERTYPE Region#17 STEPMATRIX = 7
	[0 = AAAC]
	[1 = AAAU]
	[2 = AACC]
	[3 = AACU]
	[4 = ACCA]
	[5 = ACCC]
	[6 = UAAC]

	          0     1     2     3     4     5     6 
	  [0]      .  1.00  1.00  2.00  3.00  2.00  1.00
	  [1]   1.00     .  2.00  1.00  2.00  3.00  2.00
	  [2]   1.00  2.00     .  1.00  2.00  1.00  2.00
	  [3]   2.00  1.00  1.00     .  2.00  2.00  3.00
	  [4]   3.00  2.00  2.00  2.00     .  1.00  3.00
	  [5]   2.00  3.00  1.00  2.00  1.00     .  3.00
	  [6]   1.00  2.00  2.00  3.00  3.00  3.00     .
;


	USERTYPE Region#18 STEPMATRIX = 11
	[0 = AAAAC]
	[1 = AAAAU]
	[2 = AAACAA]
	[3 = AAAUAA]
	[4 = AACAAU]
	[5 = AAUAAA]
	[6 = ACACAA]
	[7 = UAAUAA]
	[8 = UAUAAGA]
	[9 = UCAAA]
	[A = UCAAC]

	          0     1     2     3     4     5     6     7     8     9     A 
	  [0]      .  1.00  2.00  2.00  2.00  2.00  3.00  3.00  4.00  3.00  2.00
	  [1]   1.00     .  2.00  2.00  1.00  2.00  3.00  3.00  4.00  3.00  3.00
	  [2]   2.00  2.00     .  1.00  2.00  2.00  1.00  2.00  4.00  3.00  4.00
	  [3]   2.00  2.00  1.00     .  3.00  2.00  2.00  1.00  4.00  3.00  4.00
	  [4]   2.00  1.00  2.00  3.00     .  2.00  3.00  4.00  4.00  3.00  3.00
	  [5]   2.00  2.00  2.00  2.00  2.00     .  3.00  3.00  2.00  3.00  4.00
	  [6]   3.00  3.00  1.00  2.00  3.00  3.00     .  3.00  4.00  2.00  3.00
	  [7]   3.00  3.00  2.00  1.00  4.00  3.00  3.00     .  3.00  2.00  3.00
	  [8]   4.00  4.00  4.00  4.00  4.00  2.00  4.00  3.00     .  3.00  4.00
	  [9]   3.00  3.00  3.00  3.00  3.00  3.00  2.00  2.00  3.00     .  1.00
	  [A]   2.00  3.00  4.00  4.00  3.00  4.00  3.00  3.00  4.00  1.00     .
;


	USERTYPE Region#19 STEPMATRIX = 3
	[0 = A]
	[1 = AA]
	[2 = AC]

	          0     1     2 
	  [0]      .  1.00  1.00
	  [1]   1.00     .  1.00
	  [2]   1.00  1.00     .
;


	USERTYPE Region#20 STEPMATRIX = 7
	[0 = AAA]
	[1 = AC]
	[2 = AU]
	[3 = GAA]
	[4 = GUA]
	[5 = UAA]
	[6 = UUA]

	          0     1     2     3     4     5     6 
	  [0]      .  2.00  2.00  1.00  2.00  1.00  2.00
	  [1]   2.00     .  1.00  2.00  2.00  2.00  2.00
	  [2]   2.00  1.00     .  2.00  2.00  2.00  2.00
	  [3]   1.00  2.00  2.00     .  1.00  1.00  2.00
	  [4]   2.00  2.00  2.00  1.00     .  2.00  1.00
	  [5]   1.00  2.00  2.00  1.00  2.00     .  1.00
	  [6]   2.00  2.00  2.00  2.00  1.00  1.00     .
;


	USERTYPE Region#21 STEPMATRIX = 12
	[0 = AAC]
	[1 = AAU]
	[2 = ACC]
	[3 = AGC]
	[4 = AUC]
	[5 = CAC]
	[6 = CAG]
	[7 = CAU]
	[8 = CUA]
	[9 = CUU]
	[A = UUA]
	[C = UUC]

	          0     1     2     3     4     5     6     7     8     9     A     C 
	  [0]      .  1.00  1.00  1.00  1.00  1.00  2.00  2.00  3.00  2.00  2.00  2.00
	  [1]   1.00     .  2.00  2.00  2.00  2.00  2.00  1.00  2.00  2.00  3.00  2.00
	  [2]   1.00  2.00     .  1.00  1.00  2.00  3.00  3.00  3.00  3.00  2.00  2.00
	  [3]   1.00  2.00  1.00     .  1.00  2.00  2.00  3.00  3.00  2.00  2.00  2.00
	  [4]   1.00  2.00  1.00  1.00     .  2.00  3.00  2.00  2.00  2.00  2.00  1.00
	  [5]   1.00  2.00  2.00  2.00  2.00     .  1.00  1.00  2.00  2.00  3.00  2.00
	  [6]   2.00  2.00  3.00  2.00  3.00  1.00     .  1.00  2.00  2.00  3.00  2.00
	  [7]   2.00  1.00  3.00  3.00  2.00  1.00  1.00     .  2.00  1.00  2.00  3.00
	  [8]   3.00  2.00  3.00  3.00  2.00  2.00  2.00  2.00     .  1.00  1.00  2.00
	  [9]   2.00  2.00  3.00  2.00  2.00  2.00  2.00  1.00  1.00     .  2.00  2.00
	  [A]   2.00  3.00  2.00  2.00  2.00  3.00  3.00  2.00  1.00  2.00     .  1.00
	  [C]   2.00  2.00  2.00  2.00  1.00  2.00  2.00  3.00  2.00  2.00  1.00     .
;


	USERTYPE Region#22 STEPMATRIX = 9
	[0 = AAA]
	[1 = ACA]
	[2 = ACCAA]
	[3 = AUCA]
	[4 = AUUA]
	[5 = CAAAU]
	[6 = CUA]
	[7 = CUAAU]
	[8 = UAAA]

	          0     1     2     3     4     5     6     7     8 
	  [0]      .  1.00  1.00  2.00  2.00  2.00  2.00  2.00  1.00
	  [1]   1.00     .  1.00  1.00  2.00  3.00  2.00  3.00  2.00
	  [2]   1.00  1.00     .  2.00  3.00  3.00  2.00  3.00  3.00
	  [3]   2.00  1.00  2.00     .  1.00  4.00  2.00  3.00  3.00
	  [4]   2.00  2.00  3.00  1.00     .  4.00  2.00  3.00  3.00
	  [5]   2.00  3.00  3.00  4.00  4.00     .  2.00  1.00  3.00
	  [6]   2.00  2.00  2.00  2.00  2.00  2.00     .  2.00  3.00
	  [7]   2.00  3.00  3.00  3.00  3.00  1.00  2.00     .  2.00
	  [8]   1.00  2.00  3.00  3.00  3.00  3.00  3.00  2.00     .
;


	USERTYPE Region#23 STEPMATRIX = 8
	[0 = AAA]
	[1 = AAAA]
	[2 = AAAC]
	[3 = AAUA]
	[4 = GAAA]
	[5 = GAC]
	[6 = GAU]
	[7 = GUC]

	          0     1     2     3     4     5     6     7 
	  [0]      .  1.00  1.00  1.00  1.00  2.00  2.00  3.00
	  [1]   1.00     .  1.00  1.00  1.00  3.00  3.00  4.00
	  [2]   1.00  1.00     .  2.00  2.00  2.00  3.00  3.00
	  [3]   1.00  1.00  2.00     .  2.00  3.00  2.00  3.00
	  [4]   1.00  1.00  2.00  2.00     .  2.00  2.00  3.00
	  [5]   2.00  3.00  2.00  3.00  2.00     .  1.00  1.00
	  [6]   2.00  3.00  3.00  2.00  2.00  1.00     .  2.00
	  [7]   3.00  4.00  3.00  3.00  3.00  1.00  2.00     .
;


	USERTYPE Region#24 STEPMATRIX = 3
	[0 = AA]
	[1 = AC]
	[2 = GC]

	          0     1     2 
	  [0]      .  1.00  2.00
	  [1]   1.00     .  1.00
	  [2]   2.00  1.00     .
;


	USERTYPE Region#25 STEPMATRIX = 18
	[0 = CAAAAAUUCAAAUAAACCCCACU]
	[1 = CCACAGAACCCUCCAAAUCCUCCC]
	[2 = CCACAGAACCCUCUAAAUCCCCUU]
	[3 = CCACAGAAUAACCCAAUCCCAAUCCCUCU]
	[4 = CCGUAGAACCCCUAAAUCUUCUU]
	[5 = CUAAAAACCACUUAAUUCUAAU]
	[6 = CUAAAAACUACUCAAUUCUAAU]
	[7 = CUAAAAGCCCCAACAACUCUAAU]
	[8 = CUACAGAACCCUCUAAAUCCCCCU]
	[9 = CUACAGAACCCUCUAAAUCCCCUU]
	[A = UAAAAGCCAUGCCAAGCCUUGAC]
	[C = UAAAAGCCCAUGCCAAGCCUUAAC]
	[E = UACAAUGCCUAUUCAAAGCACACA]
	[F = UUAAAUUACCAACAAACUUAAC]
	[T = UUACAGAACCCCUAAUCCCCUC]
	[J = UUACAGAGUCCCUAAUCCCCUC]
	[G = UUCCCUAGCACCCUAUAUGACUC]
	[L = UUCCUGAUAUACUAUAUUAACC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G     L 
	  [0]      .  8.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [1]   8.00     .  4.00  7.00  7.00  8.00  8.00  8.00  4.00  5.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00
	  [2]   8.00  4.00     .  7.00  5.00  8.00  8.00  8.00  2.00  1.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00
	  [3]   8.00  7.00  7.00     .  8.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [4]   7.00  7.00  5.00  8.00     .  8.00  8.00  8.00  7.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [5]   8.00  8.00  8.00  8.00  8.00     .  2.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  5.00
	  [6]   8.00  8.00  8.00  8.00  8.00  2.00     .  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [7]   8.00  8.00  8.00  8.00  8.00  6.00  6.00     .  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00
	  [8]   8.00  4.00  2.00  7.00  7.00  8.00  8.00  8.00     .  1.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00
	  [9]   8.00  5.00  1.00  8.00  6.00  8.00  8.00  8.00  1.00     .  8.00  8.00  8.00  8.00  5.00  7.00  8.00  8.00
	  [A]   6.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00     .  2.00  8.00  8.00  8.00  8.00  6.00  8.00
	  [C]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  2.00     .  8.00  8.00  8.00  8.00  8.00  8.00
	  [E]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00
	  [F]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00
	  [T]   8.00  6.00  6.00  8.00  8.00  8.00  8.00  8.00  6.00  5.00  8.00  8.00  8.00  8.00     .  2.00  8.00  8.00
	  [J]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  2.00     .  8.00  8.00
	  [G]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00     .  8.00
	  [L]   8.00  8.00  8.00  8.00  8.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .
;


	USERTYPE Region#26 STEPMATRIX = 10
	[0 = AC]
	[1 = ACA]
	[2 = ACUA]
	[3 = AU]
	[4 = CAA]
	[5 = CAU]
	[6 = UAA]
	[7 = UAAG]
	[8 = UCA]
	[9 = UCUA]

	          0     1     2     3     4     5     6     7     8     9 
	  [0]      .  1.00  1.00  1.00  2.00  2.00  2.00  2.00  2.00  2.00
	  [1]   1.00     .  1.00  2.00  2.00  2.00  2.00  3.00  1.00  2.00
	  [2]   1.00  1.00     .  2.00  2.00  3.00  3.00  2.00  2.00  1.00
	  [3]   1.00  2.00  2.00     .  2.00  1.00  2.00  2.00  3.00  3.00
	  [4]   2.00  2.00  2.00  2.00     .  1.00  1.00  2.00  2.00  2.00
	  [5]   2.00  2.00  3.00  1.00  1.00     .  2.00  3.00  2.00  3.00
	  [6]   2.00  2.00  3.00  2.00  1.00  2.00     .  1.00  1.00  2.00
	  [7]   2.00  3.00  2.00  2.00  2.00  3.00  1.00     .  2.00  2.00
	  [8]   2.00  1.00  2.00  3.00  2.00  2.00  1.00  2.00     .  1.00
	  [9]   2.00  2.00  1.00  3.00  2.00  3.00  2.00  2.00  1.00     .
;


	USERTYPE Region#27 STEPMATRIX = 5
	[0 = AA]
	[1 = AAA]
	[2 = AUA]
	[3 = GUA]
	[4 = UUA]

	          0     1     2     3     4 
	  [0]      .  1.00  1.00  2.00  2.00
	  [1]   1.00     .  1.00  2.00  2.00
	  [2]   1.00  1.00     .  1.00  1.00
	  [3]   2.00  2.00  1.00     .  1.00
	  [4]   2.00  2.00  1.00  1.00     .
;


	USERTYPE Region#28 STEPMATRIX = 17
	[0 = AAAACACAACAC]
	[1 = AAAACACAGCAC]
	[2 = AAAAUUUAACAC]
	[3 = AAAAUUUAAUAC]
	[4 = AAAAUUUAAUGC]
	[5 = AAACCCCCGUCA]
	[6 = AAAGUGUAAACC]
	[7 = AACCAAACAUACA]
	[8 = AAUCAAACAUAA]
	[9 = AAUUUAACACUA]
	[A = CUCUUACCACGU]
	[C = GAACAAGAUAAAC]
	[E = GAAUAAGAUUAAUC]
	[F = GAUCAGAAUUAC]
	[T = UAAUUAAUAAUCC]
	[J = UGAAUACUAAGAA]
	[G = UUUAUUCUUAUUU]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  1.00  3.00  4.00  5.00  4.00  6.00  7.00  7.00  7.00  7.00  6.00  7.00  8.00  7.00  6.00  8.00
	  [1]   1.00     .  4.00  5.00  6.00  4.00  6.00  7.00  5.00  4.00  8.00  7.00  7.00  8.00  8.00  7.00  8.00
	  [2]   3.00  4.00     .  1.00  2.00  3.00  4.00  8.00  5.00  2.00  8.00  7.00  7.00  8.00  6.00  6.00  8.00
	  [3]   4.00  5.00  1.00     .  1.00  8.00  4.00  8.00  6.00  3.00  8.00  7.00  7.00  7.00  5.00  6.00  7.00
	  [4]   5.00  6.00  2.00  1.00     .  8.00  4.00  8.00  3.00  3.00  8.00  8.00  7.00  8.00  5.00  7.00  7.00
	  [5]   4.00  4.00  3.00  8.00  8.00     .  4.00  6.00  6.00  5.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [6]   6.00  6.00  4.00  4.00  4.00  4.00     .  8.00  3.00  5.00  8.00  7.00  7.00  7.00  5.00  8.00  8.00
	  [7]   7.00  7.00  8.00  8.00  8.00  6.00  8.00     .  2.00  6.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00
	  [8]   7.00  5.00  5.00  6.00  3.00  6.00  3.00  2.00     .  4.00  6.00  6.00  8.00  5.00  6.00  8.00  8.00
	  [9]   7.00  4.00  2.00  3.00  3.00  5.00  5.00  6.00  4.00     .  6.00  8.00  8.00  8.00  6.00  8.00  8.00
	  [A]   7.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  6.00  6.00     .  8.00  8.00  8.00  8.00  8.00  8.00
	  [C]   6.00  7.00  7.00  7.00  8.00  8.00  7.00  8.00  6.00  8.00  8.00     .  3.00  5.00  8.00  7.00  5.00
	  [E]   7.00  7.00  7.00  7.00  7.00  8.00  7.00  8.00  8.00  8.00  8.00  3.00     .  5.00  6.00  8.00  8.00
	  [F]   8.00  8.00  8.00  7.00  8.00  8.00  7.00  7.00  5.00  8.00  8.00  5.00  5.00     .  7.00  8.00  8.00
	  [T]   7.00  8.00  6.00  5.00  5.00  8.00  5.00  8.00  6.00  6.00  8.00  8.00  6.00  7.00     .  6.00  7.00
	  [J]   6.00  7.00  6.00  6.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  6.00     .  7.00
	  [G]   8.00  8.00  8.00  7.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  5.00  8.00  8.00  7.00  7.00     .
;


	USERTYPE Region#29 STEPMATRIX = 3
	[0 = CU]
	[1 = UA]
	[2 = UC]

	          0     1     2 
	  [0]      .  2.00  2.00
	  [1]   2.00     .  1.00
	  [2]   2.00  1.00     .
;


	USERTYPE Region#30 STEPMATRIX = 18
	[0 = AAACCCAACCCUUUUCUCUAAU]
	[1 = AAACUCACAUUCCAAUUUAA]
	[2 = AAACUUCAUUCUUUCUUAAU]
	[3 = AAAUGUAUUAACAGACCUUAA]
	[4 = AACAACAAAAAUUAAAUAGA]
	[5 = AACAACACAACUACCUUAA]
	[6 = AACACCACCUAUCCAACAAA]
	[7 = AACACCCACAACCUCAAAAAA]
	[8 = AACACCCACAACCUUAAAGA]
	[9 = AACACCCACUACCUAAAAAA]
	[A = AACACUAUCACCCAAAAUAA]
	[C = AACAUUAACCACCUAAAAAA]
	[E = AACGACACAUCUAUCUUAA]
	[F = AACGUCACACAUAUCUUAA]
	[T = GACAACAAAAUAAUGUUUUAA]
	[J = GACAAUAAAACAAUGUUUUAA]
	[G = GACACCCAAACACCAAAAAA]
	[L = GACACCUAAACACCAAAAAA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G     L 
	  [0]      .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [1]   8.00     .  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00  7.00  8.00  8.00  8.00  8.00  8.00
	  [2]   8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [3]   8.00  8.00  8.00     .  8.00  8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  4.00  8.00  8.00
	  [4]   8.00  7.00  8.00  8.00     .  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [5]   8.00  8.00  8.00  8.00  7.00     .  8.00  8.00  8.00  8.00  8.00  8.00  3.00  5.00  7.00  7.00  8.00  8.00
	  [6]   8.00  8.00  8.00  8.00  8.00  8.00     .  6.00  8.00  5.00  5.00  7.00  8.00  8.00  8.00  8.00  7.00  6.00
	  [7]   8.00  8.00  8.00  6.00  8.00  8.00  6.00     .  3.00  2.00  7.00  5.00  8.00  8.00  8.00  8.00  4.00  5.00
	  [8]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00     .  3.00  8.00  6.00  8.00  8.00  8.00  8.00  7.00  8.00
	  [9]   8.00  8.00  8.00  8.00  8.00  8.00  5.00  2.00  3.00     .  7.00  4.00  8.00  8.00  8.00  8.00  6.00  8.00
	  [A]   8.00  8.00  8.00  8.00  8.00  8.00  5.00  7.00  8.00  7.00     .  6.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [C]   8.00  3.00  8.00  8.00  8.00  8.00  7.00  5.00  6.00  4.00  6.00     .  8.00  8.00  8.00  8.00  8.00  8.00
	  [E]   8.00  7.00  8.00  8.00  8.00  3.00  8.00  8.00  8.00  8.00  8.00  8.00     .  3.00  8.00  8.00  8.00  8.00
	  [F]   8.00  8.00  8.00  8.00  8.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00     .  8.00  8.00  8.00  8.00
	  [T]   8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  2.00  8.00  8.00
	  [J]   8.00  8.00  8.00  4.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  2.00     .  8.00  8.00
	  [G]   8.00  8.00  8.00  8.00  8.00  8.00  7.00  4.00  7.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00     .  1.00
	  [L]   8.00  8.00  8.00  8.00  8.00  8.00  6.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  1.00     .
;


	USERTYPE Region#31 STEPMATRIX = 17
	[0 = AACACAAAACUGAA]
	[1 = AACACACAACUGAA]
	[2 = AACAUAAGACUGAA]
	[3 = AACAUACAACCGAA]
	[4 = AACAUACUAUUGAA]
	[5 = AACAUAUAACUGAA]
	[6 = AACUUCUUAACUA]
	[7 = AAUAUCUCAACUA]
	[8 = ACAACAAAUGAUUAA]
	[9 = ACAAUAAUUAACCAA]
	[A = ACAAUCAACCCAAACUAA]
	[C = ACAUUAAGUAAAUCAA]
	[E = ACAUUAGACAAAUCAA]
	[F = AGCAUACAAGCGAA]
	[T = AUAAUAGACUCAGACUAA]
	[J = AUAAUAUUAUCAAAA]
	[G = UAAAAAAACUAAAA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  1.00  2.00  3.00  4.00  2.00  8.00  8.00  6.00  8.00  8.00  7.00  7.00  5.00  8.00  8.00  7.00
	  [1]   1.00     .  3.00  2.00  3.00  2.00  8.00  8.00  7.00  8.00  7.00  8.00  6.00  4.00  7.00  8.00  8.00
	  [2]   2.00  3.00     .  3.00  3.00  2.00  8.00  8.00  8.00  7.00  8.00  6.00  8.00  5.00  8.00  7.00  8.00
	  [3]   3.00  2.00  3.00     .  3.00  2.00  7.00  7.00  8.00  7.00  6.00  8.00  7.00  2.00  6.00  7.00  8.00
	  [4]   4.00  3.00  3.00  3.00     .  3.00  7.00  7.00  8.00  7.00  8.00  8.00  7.00  4.00  8.00  6.00  8.00
	  [5]   2.00  2.00  2.00  2.00  3.00     .  7.00  7.00  8.00  7.00  8.00  6.00  7.00  4.00  8.00  6.00  8.00
	  [6]   8.00  8.00  8.00  7.00  7.00  7.00     .  3.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  7.00  8.00
	  [7]   8.00  8.00  8.00  7.00  7.00  7.00  3.00     .  8.00  6.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00
	  [8]   6.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00     .  3.00  6.00  6.00  7.00  8.00  6.00  8.00  7.00
	  [9]   8.00  8.00  7.00  7.00  7.00  7.00  8.00  6.00  3.00     .  5.00  4.00  5.00  7.00  7.00  5.00  8.00
	  [A]   8.00  7.00  8.00  6.00  8.00  8.00  8.00  8.00  6.00  5.00     .  7.00  6.00  6.00  5.00  7.00  7.00
	  [C]   7.00  8.00  6.00  8.00  8.00  6.00  8.00  8.00  6.00  4.00  7.00     .  3.00  8.00  8.00  8.00  8.00
	  [E]   7.00  6.00  8.00  7.00  7.00  7.00  7.00  8.00  7.00  5.00  6.00  3.00     .  7.00  6.00  8.00  7.00
	  [F]   5.00  4.00  5.00  2.00  4.00  4.00  8.00  8.00  8.00  7.00  6.00  8.00  7.00     .  6.00  7.00  8.00
	  [T]   8.00  7.00  8.00  6.00  8.00  8.00  8.00  8.00  6.00  7.00  5.00  8.00  6.00  6.00     .  5.00  6.00
	  [J]   8.00  8.00  7.00  7.00  6.00  6.00  7.00  7.00  8.00  5.00  7.00  8.00  8.00  7.00  5.00     .  6.00
	  [G]   7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  7.00  8.00  7.00  8.00  6.00  6.00     .
;


	USERTYPE Region#32 STEPMATRIX = 17
	[0 = AAAAUAAUA]
	[1 = AAAAUACUA]
	[2 = AAAUCAAUA]
	[3 = AACAUAGACUA]
	[4 = AACUUAAUA]
	[5 = AAUCUCAUA]
	[6 = AAUCUUAUA]
	[7 = AGCAUGAUUA]
	[8 = AGCCCCAAUA]
	[9 = AGCCUGACUA]
	[A = CACACCCAA]
	[C = UAAAUCACA]
	[E = UACACCCAA]
	[F = UACGCUCAA]
	[T = UACUCCCAA]
	[J = UACUCCCCA]
	[G = UCCACCACA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  1.00  2.00  3.00  2.00  3.00  3.00  4.00  5.00  5.00  6.00  3.00  6.00  5.00  3.00  3.00  6.00
	  [1]   1.00     .  3.00  2.00  3.00  4.00  4.00  4.00  6.00  4.00  5.00  4.00  5.00  6.00  2.00  2.00  4.00
	  [2]   2.00  3.00     .  5.00  2.00  4.00  4.00  4.00  4.00  5.00  6.00  5.00  6.00  4.00  5.00  5.00  6.00
	  [3]   3.00  2.00  5.00     .  3.00  5.00  5.00  3.00  6.00  3.00  5.00  6.00  5.00  6.00  6.00  6.00  7.00
	  [4]   2.00  3.00  2.00  3.00     .  3.00  3.00  4.00  4.00  4.00  6.00  5.00  6.00  4.00  5.00  5.00  6.00
	  [5]   3.00  4.00  4.00  5.00  3.00     .  1.00  5.00  4.00  4.00  6.00  4.00  6.00  5.00  6.00  6.00  6.00
	  [6]   3.00  4.00  4.00  5.00  3.00  1.00     .  5.00  5.00  4.00  4.00  5.00  3.00  6.00  5.00  7.00  4.00
	  [7]   4.00  4.00  4.00  3.00  4.00  5.00  5.00     .  4.00  2.00  7.00  6.00  7.00  8.00  7.00  7.00  6.00
	  [8]   5.00  6.00  4.00  6.00  4.00  4.00  5.00  4.00     .  3.00  5.00  7.00  5.00  6.00  5.00  6.00  5.00
	  [9]   5.00  4.00  5.00  3.00  4.00  4.00  4.00  2.00  3.00     .  7.00  6.00  7.00  7.00  6.00  6.00  6.00
	  [A]   6.00  5.00  6.00  5.00  6.00  6.00  4.00  7.00  5.00  7.00     .  5.00  1.00  3.00  2.00  3.00  4.00
	  [C]   3.00  4.00  5.00  6.00  5.00  4.00  5.00  6.00  7.00  6.00  5.00     .  4.00  4.00  5.00  4.00  3.00
	  [E]   6.00  5.00  6.00  5.00  6.00  6.00  3.00  7.00  5.00  7.00  1.00  4.00     .  2.00  1.00  2.00  3.00
	  [F]   5.00  6.00  4.00  6.00  4.00  5.00  6.00  8.00  6.00  7.00  3.00  4.00  2.00     .  2.00  3.00  4.00
	  [T]   3.00  2.00  5.00  6.00  5.00  6.00  5.00  7.00  5.00  6.00  2.00  5.00  1.00  2.00     .  1.00  4.00
	  [J]   3.00  2.00  5.00  6.00  5.00  6.00  7.00  7.00  6.00  6.00  3.00  4.00  2.00  3.00  1.00     .  3.00
	  [G]   6.00  4.00  6.00  7.00  6.00  6.00  4.00  6.00  5.00  6.00  4.00  3.00  3.00  4.00  4.00  3.00     .
;


	USERTYPE Region#33 STEPMATRIX = 11
	[0 = AAAUU]
	[1 = AACAU]
	[2 = AUAU]
	[3 = AUUU]
	[4 = CCCCG]
	[5 = CUAU]
	[6 = CUCUCU]
	[7 = GAUAU]
	[8 = UAACAU]
	[9 = UUAU]
	[A = UUUA]

	          0     1     2     3     4     5     6     7     8     9     A 
	  [0]      .  2.00  2.00  2.00  5.00  3.00  4.00  3.00  3.00  3.00  4.00
	  [1]   2.00     .  2.00  3.00  4.00  3.00  4.00  2.00  1.00  3.00  4.00
	  [2]   2.00  2.00     .  1.00  5.00  1.00  3.00  1.00  2.00  1.00  3.00
	  [3]   2.00  3.00  1.00     .  5.00  2.00  3.00  2.00  3.00  2.00  2.00
	  [4]   5.00  4.00  5.00  5.00     .  4.00  3.00  2.00  5.00  5.00  5.00
	  [5]   3.00  3.00  1.00  2.00  4.00     .  2.00  2.00  3.00  1.00  3.00
	  [6]   4.00  4.00  3.00  3.00  3.00  2.00     .  4.00  4.00  3.00  4.00
	  [7]   3.00  2.00  1.00  2.00  2.00  2.00  4.00     .  3.00  2.00  3.00
	  [8]   3.00  1.00  2.00  3.00  5.00  3.00  4.00  3.00     .  2.00  4.00
	  [9]   3.00  3.00  1.00  2.00  5.00  1.00  3.00  2.00  2.00     .  2.00
	  [A]   4.00  4.00  3.00  2.00  5.00  3.00  4.00  3.00  4.00  2.00     .
;


	USERTYPE Region#34 STEPMATRIX = 8
	[0 = CAU]
	[1 = CCC]
	[2 = CCUACU]
	[3 = CUA]
	[4 = CUC]
	[5 = CUU]
	[6 = UCC]
	[7 = UCU]

	          0     1     2     3     4     5     6     7 
	  [0]      .  2.00  2.00  2.00  2.00  1.00  3.00  2.00
	  [1]   2.00     .  2.00  2.00  1.00  2.00  1.00  2.00
	  [2]   2.00  2.00     .  3.00  3.00  2.00  3.00  2.00
	  [3]   2.00  2.00  3.00     .  1.00  1.00  3.00  3.00
	  [4]   2.00  1.00  3.00  1.00     .  1.00  2.00  3.00
	  [5]   1.00  2.00  2.00  1.00  1.00     .  3.00  2.00
	  [6]   3.00  1.00  3.00  3.00  2.00  3.00     .  1.00
	  [7]   2.00  2.00  2.00  3.00  3.00  2.00  1.00     .
;


	USERTYPE Region#35 STEPMATRIX = 14
	[0 = AACGAAUAACCA]
	[1 = AACGAAUACUCA]
	[2 = AACGGAACAACCA]
	[3 = AACGGAGCAUCCA]
	[4 = AAUAACGGAUAUCCCA]
	[5 = ACCAAAAAACUUCG]
	[6 = ACCAAAACAUCACA]
	[7 = ACCAAAACCCCA]
	[8 = ACCAAAAUAUUAAA]
	[9 = ACCGAAACAUCACA]
	[A = AUCAAAACACUGAA]
	[C = CAACGGAAUACCCA]
	[E = UAACUGAUAAUAUA]
	[F = UGCCUGAUAAUACU]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F 
	  [0]      .  2.00  2.00  4.00  6.00  5.00  6.00  5.00  7.00  5.00  6.00  4.00  8.00  8.00
	  [1]   2.00     .  4.00  5.00  6.00  6.00  6.00  5.00  7.00  5.00  8.00  4.00  8.00  8.00
	  [2]   2.00  4.00     .  2.00  5.00  8.00  5.00  5.00  8.00  4.00  7.00  3.00  7.00  8.00
	  [3]   4.00  5.00  2.00     .  5.00  8.00  5.00  6.00  8.00  4.00  7.00  4.00  6.00  8.00
	  [4]   6.00  6.00  5.00  5.00     .  8.00  6.00  5.00  7.00  7.00  8.00  5.00  6.00  8.00
	  [5]   5.00  6.00  8.00  8.00  8.00     .  5.00  4.00  5.00  6.00  5.00  8.00  8.00  8.00
	  [6]   6.00  6.00  5.00  5.00  6.00  5.00     .  2.00  3.00  1.00  5.00  8.00  8.00  8.00
	  [7]   5.00  5.00  5.00  6.00  5.00  4.00  2.00     .  5.00  3.00  4.00  5.00  8.00  8.00
	  [8]   7.00  7.00  8.00  8.00  7.00  5.00  3.00  5.00     .  4.00  4.00  8.00  8.00  8.00
	  [9]   5.00  5.00  4.00  4.00  7.00  6.00  1.00  3.00  4.00     .  6.00  7.00  8.00  8.00
	  [A]   6.00  8.00  7.00  7.00  8.00  5.00  5.00  4.00  4.00  6.00     .  4.00  8.00  8.00
	  [C]   4.00  4.00  3.00  4.00  5.00  8.00  8.00  5.00  8.00  7.00  4.00     .  7.00  8.00
	  [E]   8.00  8.00  7.00  6.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00     .  4.00
	  [F]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  4.00     .
;


	USERTYPE Region#36 STEPMATRIX = 1
	[0 = AA]

	          0 
	  [0]      .
;


	USERTYPE Region#37 STEPMATRIX = 17
	[0 = AAAUAAAUAAAACCCAACACUAAAUUAUUUAUUAAAAU]
	[1 = AAAUAAAUAAAAUCUAACACUAGACUAUUUAUUAAGAC]
	[2 = AACAUAAUAACAUUCAUCAACCAGCCUCUUAUACAAAAU]
	[3 = AAGAUAAACACAAUCCAACAACAAACUACCUAUCAAAUCA]
	[4 = AAGAUAGGGAUAAUCCAAAAACUAAUCAUCUAUUUAAACC]
	[5 = AGAAUAGACACAAUCCAAAAACUAACCAUCUAUUUAGACU]
	[6 = CAAUAAAAAUAAUCCAACAAUAAACAAUUUAUUGAUUAU]
	[7 = CCAAUAUCUAAAACCAACUGAUAAACCAUUAUUGCCCAC]
	[8 = CCAAUAUCUACAAUCAACCAACAAGCCGUUAUUACCCCC]
	[9 = CCAAUAUCUACAAUCAACCAACAAGUCAUUAUUACCCUC]
	[A = CCAAUAUGCAUAAUUAACAAAUAAACUACUAUUACCCCC]
	[C = CCAAUAUGCAUAGUUAACAAAUAAACUAUUAUUUUUUCCC]
	[E = CCAGUACUAACAAACUCAAACAAGUCCAUACUACUCUU]
	[F = CUAAUAUCUACAAUCAACCAACAAGCCAUUAUUACCCCC]
	[T = UAAAUAAUCAUAAAUAUUAACUAGAAACAUUAUUUUAUAA]
	[J = UAAAUAAUUAAAACUAUAAACAAGAGCCAUUAUUUU]
	[G = UCAAUAAUCCUAACCAAAUAACUAGUAAAAUUCUUACAACU]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [1]   6.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [2]   8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [3]   8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [4]   8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [5]   8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [6]   8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [7]   8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [8]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  3.00  8.00  8.00  8.00  2.00  8.00  8.00  8.00
	  [9]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00     .  8.00  8.00  8.00  3.00  8.00  8.00  8.00
	  [A]   8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  6.00  8.00  8.00  8.00  8.00  8.00
	  [C]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00     .  8.00  8.00  8.00  8.00  8.00
	  [E]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00
	  [F]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  2.00  3.00  8.00  8.00  8.00     .  8.00  8.00  8.00
	  [T]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00
	  [J]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00
	  [G]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .
;


	USERTYPE Region#38 STEPMATRIX = 14
	[0 = ACACA]
	[1 = ACCCAUA]
	[2 = ACUAA]
	[3 = ACUUCAA]
	[4 = AUCUA]
	[5 = AUCUAUA]
	[6 = AUUA]
	[7 = AUUAA]
	[8 = CCACA]
	[9 = CCAUC]
	[A = CUAUA]
	[C = UAAC]
	[E = UCAUA]
	[F = UUUUA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F 
	  [0]      .  2.00  2.00  3.00  3.00  3.00  3.00  3.00  1.00  3.00  3.00  3.00  2.00  4.00
	  [1]   2.00     .  3.00  3.00  2.00  2.00  2.00  4.00  2.00  2.00  2.00  4.00  2.00  4.00
	  [2]   2.00  3.00     .  1.00  2.00  4.00  2.00  1.00  3.00  4.00  2.00  4.00  3.00  3.00
	  [3]   3.00  3.00  1.00     .  2.00  4.00  2.00  2.00  4.00  4.00  4.00  3.00  3.00  3.00
	  [4]   3.00  2.00  2.00  2.00     .  1.00  1.00  2.00  3.00  4.00  2.00  4.00  3.00  2.00
	  [5]   3.00  2.00  4.00  4.00  1.00     .  1.00  3.00  3.00  3.00  1.00  3.00  3.00  3.00
	  [6]   3.00  2.00  2.00  2.00  1.00  1.00     .  1.00  4.00  4.00  2.00  3.00  3.00  2.00
	  [7]   3.00  4.00  1.00  2.00  2.00  3.00  1.00     .  4.00  3.00  3.00  3.00  3.00  2.00
	  [8]   1.00  2.00  3.00  4.00  3.00  3.00  4.00  4.00     .  2.00  2.00  3.00  2.00  4.00
	  [9]   3.00  2.00  4.00  4.00  4.00  3.00  4.00  3.00  2.00     .  2.00  3.00  2.00  4.00
	  [A]   3.00  2.00  2.00  4.00  2.00  1.00  2.00  3.00  2.00  2.00     .  3.00  2.00  2.00
	  [C]   3.00  4.00  4.00  3.00  4.00  3.00  3.00  3.00  3.00  3.00  3.00     .  3.00  4.00
	  [E]   2.00  2.00  3.00  3.00  3.00  3.00  3.00  3.00  2.00  2.00  2.00  3.00     .  2.00
	  [F]   4.00  4.00  3.00  3.00  2.00  3.00  2.00  2.00  4.00  4.00  2.00  4.00  2.00     .
;


	USERTYPE Region#39 STEPMATRIX = 6
	[0 = A]
	[1 = AC]
	[2 = AU]
	[3 = C]
	[4 = U]
	[5 = UA]

	          0     1     2     3     4     5 
	  [0]      .  1.00  1.00  1.00  1.00  1.00
	  [1]   1.00     .  1.00  1.00  2.00  2.00
	  [2]   1.00  1.00     .  2.00  1.00  2.00
	  [3]   1.00  1.00  2.00     .  1.00  2.00
	  [4]   1.00  2.00  1.00  1.00     .  1.00
	  [5]   1.00  2.00  2.00  2.00  1.00     .
;


	USERTYPE Region#40 STEPMATRIX = 12
	[0 = AACU]
	[1 = ACAC]
	[2 = ACAU]
	[3 = AUAC]
	[4 = AUAU]
	[5 = AUCU]
	[6 = AUGU]
	[7 = AUU]
	[8 = UAAAC]
	[9 = UAACA]
	[A = UAAUC]
	[C = UCU]

	          0     1     2     3     4     5     6     7     8     9     A     C 
	  [0]      .  3.00  2.00  3.00  2.00  1.00  2.00  2.00  3.00  2.00  3.00  2.00
	  [1]   3.00     .  1.00  1.00  2.00  3.00  3.00  3.00  2.00  3.00  3.00  3.00
	  [2]   2.00  1.00     .  2.00  1.00  2.00  2.00  2.00  3.00  4.00  3.00  2.00
	  [3]   3.00  1.00  2.00     .  1.00  2.00  2.00  2.00  2.00  3.00  3.00  3.00
	  [4]   2.00  2.00  1.00  1.00     .  1.00  1.00  1.00  3.00  4.00  3.00  2.00
	  [5]   1.00  3.00  2.00  2.00  1.00     .  1.00  1.00  4.00  3.00  4.00  1.00
	  [6]   2.00  3.00  2.00  2.00  1.00  1.00     .  1.00  4.00  4.00  4.00  2.00
	  [7]   2.00  3.00  2.00  2.00  1.00  1.00  1.00     .  3.00  3.00  2.00  2.00
	  [8]   3.00  2.00  3.00  2.00  3.00  4.00  4.00  3.00     .  2.00  1.00  3.00
	  [9]   2.00  3.00  4.00  3.00  4.00  3.00  4.00  3.00  2.00     .  2.00  2.00
	  [A]   3.00  3.00  3.00  3.00  3.00  4.00  4.00  2.00  1.00  2.00     .  3.00
	  [C]   2.00  3.00  2.00  3.00  2.00  1.00  2.00  2.00  3.00  2.00  3.00     .
;


	USERTYPE Region#41 STEPMATRIX = 5
	[0 = AA]
	[1 = CA]
	[2 = UA]
	[3 = UAA]
	[4 = UCA]

	          0     1     2     3     4 
	  [0]      .  1.00  1.00  1.00  2.00
	  [1]   1.00     .  1.00  2.00  1.00
	  [2]   1.00  1.00     .  1.00  1.00
	  [3]   1.00  2.00  1.00     .  1.00
	  [4]   2.00  1.00  1.00  1.00     .
;


	USERTYPE Region#42 STEPMATRIX = 16
	[0 = AAAACCAUAACCUUAAA]
	[1 = AAAAUCACAACCUUAAA]
	[2 = AACAACAUUCAAUAAA]
	[3 = AACAAUACUUAACAAA]
	[4 = AACAGUACCUAACAAA]
	[5 = AAGAGAAUAGAUUUAA]
	[6 = AAUAAAACUAGUACAAA]
	[7 = AAUAACAUACAACAAGC]
	[8 = AAUAACAUAUAACAAG]
	[9 = AGCAACACUUAAUAAA]
	[A = AUUCAAACAAUUCUA]
	[C = CAAAAAACAACACACAAA]
	[E = CAAAAAACAACAUACAAA]
	[F = GCUAAGAAUCGUAUAAA]
	[T = UCUUCGAACAUUCAA]
	[J = UCUUUUUCAUACAGAC]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J 
	  [0]      .  2.00  6.00  8.00  8.00  7.00  7.00  6.00  8.00  8.00  8.00  7.00  7.00  8.00  8.00  8.00
	  [1]   2.00     .  7.00  8.00  8.00  8.00  2.00  6.00  8.00  8.00  8.00  6.00  6.00  8.00  8.00  8.00
	  [2]   6.00  7.00     .  4.00  6.00  7.00  7.00  5.00  5.00  3.00  8.00  7.00  7.00  7.00  8.00  8.00
	  [3]   8.00  8.00  4.00     .  2.00  8.00  5.00  7.00  5.00  3.00  8.00  7.00  7.00  8.00  8.00  7.00
	  [4]   8.00  8.00  6.00  2.00     .  5.00  7.00  8.00  6.00  5.00  8.00  7.00  7.00  8.00  8.00  8.00
	  [5]   7.00  8.00  7.00  8.00  5.00     .  7.00  8.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00
	  [6]   7.00  2.00  7.00  5.00  7.00  7.00     .  5.00  5.00  7.00  7.00  6.00  5.00  6.00  8.00  8.00
	  [7]   6.00  6.00  5.00  7.00  8.00  8.00  5.00     .  3.00  8.00  8.00  8.00  8.00  8.00  5.00  8.00
	  [8]   8.00  8.00  5.00  5.00  6.00  5.00  5.00  3.00     .  6.00  8.00  7.00  7.00  8.00  8.00  8.00
	  [9]   8.00  8.00  3.00  3.00  5.00  8.00  7.00  8.00  6.00     .  8.00  8.00  8.00  8.00  8.00  8.00
	  [A]   8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00     .  8.00  8.00  8.00  8.00  8.00
	  [C]   7.00  6.00  7.00  7.00  7.00  8.00  6.00  8.00  7.00  8.00  8.00     .  1.00  8.00  8.00  8.00
	  [E]   7.00  6.00  7.00  7.00  7.00  8.00  5.00  8.00  7.00  8.00  8.00  1.00     .  8.00  8.00  8.00
	  [F]   8.00  8.00  7.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00  8.00
	  [T]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00     .  8.00
	  [J]   8.00  8.00  8.00  7.00  8.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .
;


	USERTYPE Region#43 STEPMATRIX = 13
	[0 = AAA]
	[1 = AACA]
	[2 = ACA]
	[3 = ACCAAG]
	[4 = AUUAA]
	[5 = CACA]
	[6 = CUACAUACA]
	[7 = CUAG]
	[8 = CUCG]
	[9 = UAACCCUCAG]
	[A = UAAG]
	[C = UACA]
	[E = UUAACCUUCAG]

	          0     1     2     3     4     5     6     7     8     9     A     C     E 
	  [0]      .  1.00  1.00  2.00  1.00  2.00  2.00  3.00  4.00  2.00  2.00  2.00  3.00
	  [1]   1.00     .  1.00  3.00  3.00  1.00  2.00  4.00  3.00  4.00  3.00  1.00  4.00
	  [2]   1.00  1.00     .  2.00  2.00  1.00  1.00  3.00  3.00  3.00  3.00  1.00  3.00
	  [3]   2.00  3.00  2.00     .  4.00  3.00  6.00  2.00  3.00  4.00  2.00  3.00  4.00
	  [4]   1.00  3.00  2.00  4.00     .  4.00  3.00  3.00  4.00  4.00  3.00  3.00  4.00
	  [5]   2.00  1.00  1.00  3.00  4.00     .  1.00  3.00  2.00  4.00  3.00  1.00  3.00
	  [6]   2.00  2.00  1.00  6.00  3.00  1.00     .  2.00  2.00  7.00  3.00  1.00  6.00
	  [7]   3.00  4.00  3.00  2.00  3.00  3.00  2.00     .  1.00  3.00  2.00  3.00  2.00
	  [8]   4.00  3.00  3.00  3.00  4.00  2.00  2.00  1.00     .  4.00  3.00  3.00  3.00
	  [9]   2.00  4.00  3.00  4.00  4.00  4.00  7.00  3.00  4.00     .  1.00  3.00  2.00
	  [A]   2.00  3.00  3.00  2.00  3.00  3.00  3.00  2.00  3.00  1.00     .  2.00  2.00
	  [C]   2.00  1.00  1.00  3.00  3.00  1.00  1.00  3.00  3.00  3.00  2.00     .  3.00
	  [E]   3.00  4.00  3.00  4.00  4.00  3.00  6.00  2.00  3.00  2.00  2.00  3.00     .
;


	USERTYPE Region#44 STEPMATRIX = 14
	[0 = AACAAACACAGACCUAC]
	[1 = AAUAACAACAAUCUCCA]
	[2 = AAUAACAUUAUUAUUAU]
	[3 = ACAACAAAACUUUUGAU]
	[4 = AUAACAAAACCUUAUA]
	[5 = AUAACAAAAUUUUAUA]
	[6 = CCCUAAAUCACCAAACC]
	[7 = CCCUAAUUCACCAAACC]
	[8 = CUCAACACCUUAAGAAUU]
	[9 = CUCUAAAACUUCUAUGCC]
	[A = UCAUAAAUUACCAAACC]
	[C = UCCUAAACUACCAAACC]
	[E = UCCUAAACUAUUAAACC]
	[F = UGUAGCAUCUAAAAAUUU]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F 
	  [0]      .  8.00  6.00  6.00  8.00  8.00  8.00  3.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [1]   8.00     .  7.00  8.00  7.00  6.00  6.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00
	  [2]   6.00  7.00     .  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [3]   6.00  8.00  8.00     .  6.00  5.00  8.00  8.00  8.00  8.00  4.00  6.00  8.00  8.00
	  [4]   8.00  7.00  8.00  6.00     .  2.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [5]   8.00  6.00  7.00  5.00  2.00     .  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [6]   8.00  6.00  8.00  8.00  8.00  8.00     .  1.00  8.00  7.00  3.00  3.00  5.00  8.00
	  [7]   3.00  8.00  8.00  8.00  8.00  7.00  1.00     .  8.00  8.00  4.00  4.00  6.00  8.00
	  [8]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .  5.00  8.00  8.00  8.00  8.00
	  [9]   8.00  8.00  8.00  8.00  8.00  8.00  7.00  8.00  5.00     .  8.00  7.00  7.00  8.00
	  [A]   8.00  7.00  8.00  4.00  8.00  8.00  3.00  4.00  8.00  8.00     .  2.00  4.00  8.00
	  [C]   8.00  8.00  8.00  6.00  8.00  8.00  3.00  4.00  8.00  7.00  2.00     .  2.00  8.00
	  [E]   8.00  8.00  8.00  8.00  8.00  8.00  5.00  6.00  8.00  7.00  4.00  2.00     .  8.00
	  [F]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00     .
;


	USERTYPE Region#45 STEPMATRIX = 6
	[0 = A]
	[1 = AAA]
	[2 = CA]
	[3 = CAA]
	[4 = UA]
	[5 = UGA]

	          0     1     2     3     4     5 
	  [0]      .  1.00  1.00  1.00  1.00  1.00
	  [1]   1.00     .  2.00  1.00  2.00  2.00
	  [2]   1.00  2.00     .  1.00  1.00  2.00
	  [3]   1.00  1.00  1.00     .  2.00  2.00
	  [4]   1.00  2.00  1.00  2.00     .  1.00
	  [5]   1.00  2.00  2.00  2.00  1.00     .
;


	USERTYPE Region#46 STEPMATRIX = 13
	[0 = AACAGUAAA]
	[1 = ACAUGUUAA]
	[2 = AUAACCUA]
	[3 = AUAUGCUAA]
	[4 = AUCCACGCCAA]
	[5 = CACAUGCCAA]
	[6 = CAUAGUAAU]
	[7 = UAAGCCAA]
	[8 = UACAUGCUAA]
	[9 = UUAAAACUUA]
	[A = UUUAAAUCCA]
	[C = UUUAAAUCUA]
	[E = UUUUAAAGACUA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E 
	  [0]      .  4.00  6.00  5.00  5.00  4.00  3.00  4.00  4.00  7.00  7.00  7.00  6.00
	  [1]   4.00     .  5.00  2.00  4.00  3.00  4.00  5.00  2.00  7.00  7.00  7.00  7.00
	  [2]   6.00  5.00     .  3.00  4.00  5.00  6.00  4.00  6.00  3.00  4.00  3.00  4.00
	  [3]   5.00  2.00  3.00     .  3.00  3.00  7.00  3.00  2.00  5.00  7.00  7.00  6.00
	  [4]   5.00  4.00  4.00  3.00     .  4.00  7.00  3.00  4.00  7.00  6.00  7.00  7.00
	  [5]   4.00  3.00  5.00  3.00  4.00     .  5.00  3.00  2.00  4.00  5.00  7.00  7.00
	  [6]   3.00  4.00  6.00  7.00  7.00  5.00     .  5.00  6.00  8.00  7.00  7.00  7.00
	  [7]   4.00  5.00  4.00  3.00  3.00  3.00  5.00     .  3.00  4.00  4.00  4.00  3.00
	  [8]   4.00  2.00  6.00  2.00  4.00  2.00  6.00  3.00     .  5.00  3.00  3.00  7.00
	  [9]   7.00  7.00  3.00  5.00  7.00  4.00  8.00  4.00  5.00     .  4.00  3.00  4.00
	  [A]   7.00  7.00  4.00  7.00  6.00  5.00  7.00  4.00  3.00  4.00     .  1.00  4.00
	  [C]   7.00  7.00  3.00  7.00  7.00  7.00  7.00  4.00  3.00  3.00  1.00     .  3.00
	  [E]   6.00  7.00  4.00  6.00  7.00  7.00  7.00  3.00  7.00  4.00  4.00  3.00     .
;


	USERTYPE Region#47 STEPMATRIX = 8
	[0 = CACA]
	[1 = CCA]
	[2 = CUA]
	[3 = CUCA]
	[4 = UAA]
	[5 = UCA]
	[6 = UUA]
	[7 = UUCA]

	          0     1     2     3     4     5     6     7 
	  [0]      .  1.00  2.00  1.00  2.00  2.00  3.00  2.00
	  [1]   1.00     .  1.00  1.00  2.00  1.00  2.00  2.00
	  [2]   2.00  1.00     .  1.00  2.00  2.00  1.00  2.00
	  [3]   1.00  1.00  1.00     .  2.00  1.00  2.00  1.00
	  [4]   2.00  2.00  2.00  2.00     .  1.00  1.00  2.00
	  [5]   2.00  1.00  2.00  1.00  1.00     .  1.00  1.00
	  [6]   3.00  2.00  1.00  2.00  1.00  1.00     .  1.00
	  [7]   2.00  2.00  2.00  1.00  2.00  1.00  1.00     .
;


	USERTYPE Region#48 STEPMATRIX = 17
	[0 = AAAAAACAAACUUCCACAC]
	[1 = AAAAAACGAACUUCCACAC]
	[2 = AAAAAGCGAACUAAUAUU]
	[3 = AAAAAUCACUCUAUCGC]
	[4 = AAUAAACGCAAAACUGC]
	[5 = AAUAAACGCAAUACUGC]
	[6 = CAAAAACGAAACUCCAUGU]
	[7 = CAAAAAUACAUAAUCAC]
	[8 = CAAAAAUAUAUAAUCAC]
	[9 = CAAAAGCGAACUACUAUA]
	[A = CAAAAGCGAAUUACUACA]
	[C = CAAAAGCGAAUUAUUACA]
	[E = CAAAAGCGAGCUACCACA]
	[F = UAAAAGUACAAUAUCAC]
	[T = UAAAAGUGUAAUAUCAC]
	[J = UACAAGUGCACAAAAGCCA]
	[G = UAUAAGCGUAACACUACCA]

	          0     1     2     3     4     5     6     7     8     9     A     C     E     F     T     J     G 
	  [0]      .  1.00  8.00  7.00  8.00  8.00  7.00  7.00  7.00  8.00  8.00  8.00  7.00  8.00  8.00  8.00  8.00
	  [1]   1.00     .  7.00  7.00  8.00  7.00  6.00  7.00  8.00  7.00  7.00  8.00  6.00  8.00  8.00  8.00  8.00
	  [2]   8.00  7.00     .  8.00  8.00  8.00  8.00  8.00  8.00  3.00  5.00  5.00  6.00  8.00  8.00  8.00  8.00
	  [3]   7.00  7.00  8.00     .  8.00  7.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  6.00  8.00  8.00  8.00
	  [4]   8.00  8.00  8.00  8.00     .  1.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00
	  [5]   8.00  7.00  8.00  7.00  1.00     .  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  7.00
	  [6]   7.00  6.00  8.00  8.00  7.00  7.00     .  8.00  8.00  7.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00
	  [7]   7.00  7.00  8.00  7.00  8.00  8.00  8.00     .  1.00  8.00  8.00  8.00  8.00  4.00  6.00  8.00  8.00
	  [8]   7.00  8.00  8.00  8.00  8.00  8.00  8.00  1.00     .  8.00  8.00  8.00  8.00  5.00  5.00  8.00  8.00
	  [9]   8.00  7.00  3.00  8.00  8.00  8.00  7.00  8.00  8.00     .  2.00  3.00  3.00  8.00  8.00  8.00  7.00
	  [A]   8.00  7.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  2.00     .  1.00  3.00  8.00  8.00  8.00  6.00
	  [C]   8.00  8.00  5.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00  1.00     .  4.00  8.00  7.00  8.00  7.00
	  [E]   7.00  6.00  6.00  8.00  8.00  8.00  8.00  8.00  8.00  3.00  3.00  4.00     .  8.00  8.00  8.00  8.00
	  [F]   8.00  8.00  8.00  6.00  8.00  8.00  8.00  4.00  5.00  8.00  8.00  8.00  8.00     .  2.00  6.00  8.00
	  [T]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00  5.00  8.00  8.00  7.00  8.00  2.00     .  7.00  7.00
	  [J]   8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  8.00  6.00  7.00     .  8.00
	  [G]   8.00  8.00  8.00  8.00  7.00  7.00  8.00  8.00  8.00  7.00  6.00  7.00  8.00  8.00  7.00  8.00     .
;end;

exclude all;
include 16S;

ctype region#1:2009;
ctype region#2:2010;
ctype region#3:2011;
ctype region#4:2012;
ctype region#5:2013;
ctype region#6:2014;
ctype region#7:2015;
ctype region#8:2016;
ctype region#9:2017;
ctype region#10:2018;
ctype region#11:2019;
ctype region#12:2020;
ctype region#13:2021;
ctype region#14:2022;
ctype region#15:2023;
ctype region#16:2024;
ctype region#17:2025;
ctype region#18:2026;
ctype region#19:2027;
ctype region#20:2028;
ctype region#21:2029;
ctype region#22:2030;
ctype region#23:2031;
ctype region#24:2032;
ctype region#25:2033;
ctype region#26:2034;
ctype region#27:2035;
ctype region#28:2036;
ctype region#29:2037;
ctype region#30:2038;
ctype region#31:2039;
ctype region#32:2040;
ctype region#33:2041;
ctype region#34:2042;
ctype region#35:2043;
ctype region#36:2044;
ctype region#37:2045;
ctype region#38:2046;
ctype region#39:2047;
ctype region#40:2048;
ctype region#41:2049;
ctype region#42:2050;
ctype region#43:2051;
ctype region#44:2052;
ctype region#45:2053;
ctype region#46:2054;
ctype region#47:2055;
ctype region#48:2056;